Conservation of cofitness between ECD_03509 and ECD_02459 in Escherichia coli BL21

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_02459 gap repair protein 0.70 19
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 1.00 b2565 recO DNA repair protein RecO (NCBI) 0.44 14
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 1.00 BNILDI_11895 recO DNA repair protein RecO — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_01142 DNA repair protein RecO low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 1.00 ECOLIN_RS14520 DNA repair protein RecO — —
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 1.00 NOLOHH_13095 recO DNA repair protein RecO low > 57
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 1.00 EFB2_01331 DNA repair protein RecO low > 86
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 1.00 JDDGAC_25085 recO DNA repair protein RecO — —
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 1.00 NIAGMN_19190 recO DNA repair protein RecO — —
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 1.00 HEPCGN_20565 recO DNA repair protein RecO low > 85
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 1.00 MCAODC_11950 recO DNA repair protein RecO — —
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 1.00 OKFHMN_21420 recO DNA repair protein RecO — —
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 1.00 KEDOAH_06800 recO DNA repair protein RecO — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.93 GFF2473 DNA recombination and repair protein RecO low > 78
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.90 EX28DRAFT_0081 DNA replication and repair protein RecO low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.81 MPMX20_03436 DNA repair protein RecO 0.41 25
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.90 BWI76_RS21310 DNA repair protein RecO low > 92
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.80 IAI47_04890 DNA repair protein RecO low > 76
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.76 IAI46_19540 DNA repair protein RecO 0.78 8
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.78 HER17_RS05825 DNA repair protein RecO low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.78 LU632_RS15375 recO DNA repair protein RecO low > 74
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.81 DDA3937_RS15725 DNA repair protein RecO low > 74
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.78 EX31_RS21845 DNA repair protein RecO low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.80 HGI48_RS15810 DNA repair protein RecO low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.80 DZA65_RS16890 DNA repair protein RecO low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.62 CSW01_12445 DNA repair protein RecO low > 62
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.28 Sama_0882 DNA repair protein RecO (RefSeq) 0.37 56
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.28 Shewana3_3024 DNA repair protein RecO (RefSeq) 0.42 59
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.29 Shew_1056 DNA repair protein RecO (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.29 SO1350 recO DNA repair protein RecO (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG 0.28 MIT1002_00790 Recombination protein O low > 70
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.28 Psest_3090 DNA repair protein RecO — —
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.28 PP_1435 DNA repair protein RecO low > 96
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.27 PfGW456L13_4838 DNA recombination and repair protein RecO 0.42 23
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.28 Pf1N1B4_890 DNA recombination and repair protein RecO low > 87
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.27 PS417_05200 DNA recombination protein RecO low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.28 AO353_04500 DNA repair protein RecO 0.35 62
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.27 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.27 PFLU_RS05270 DNA repair protein RecO 0.36 32
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.31 HP15_786 DNA repair protein RecO 0.63 19
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.29 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.46 12
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.29 OH686_20090 DNA repair protein RecO low > 80
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.29 AO356_17505 DNA repair protein RecO 0.54 7
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.28 PFR28_03521 DNA repair protein RecO low > 88
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.26 Psyr_3949 DNA replication and repair protein RecO 0.50 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.26 Psyr_3949 DNA replication and repair protein RecO 0.41 23
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.25 ABIE51_RS13850 DNA repair protein RecO low > 62
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.28 ABZR86_RS07140 DNA repair protein RecO 0.77 16
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.18 MPMX26_02153 DNA repair protein RecO low > 36
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.27 LRK55_RS16695 DNA repair protein RecO low > 63
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.27 OKGIIK_07860 recO DNA repair protein RecO low > 52
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.27 LRK54_RS16980 DNA repair protein RecO low > 59
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.24 Xcc-8004.3671.1 DNA recombination and repair protein RecO low > 74
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.25 B158DRAFT_2189 DNA replication and repair protein RecO low > 40
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.28 RS_RS05275 DNA repair protein RecO — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05675 DNA helicase RecG 0.28 RALBFv3_RS14495 DNA repair protein RecO 0.29 68
Ralstonia solanacearum UW163 0.44 UW163_RS07950 DNA helicase RecG 0.28 UW163_RS11960 DNA repair protein RecO — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11625 DNA helicase RecG 0.28 RPSI07_RS18965 DNA repair protein RecO low > 81
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.27 ABZR87_RS10215 DNA repair protein RecO low > 80
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.14 Ac3H11_1564 DNA recombination and repair protein RecO 0.28 38
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.17 GFF3348 DNA recombination and repair protein RecO 0.80 3
Dechlorosoma suillum PS 0.41 Dsui_0311 ATP-dependent DNA helicase RecG 0.25 Dsui_2462 DNA repair protein RecO 0.91 4
Variovorax sp. OAS795 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.16 ABID97_RS08375 DNA repair protein RecO 0.50 24
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.16 GFF3872 DNA recombination and repair protein RecO low > 127

Not shown: 34 genomes with orthologs for ECD_03509 only; 0 genomes with orthologs for ECD_02459 only