Conservation of cofitness between ECD_04268 and ECD_02393 in Escherichia coli BL21

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_04268 lytic murein transglycosylase, soluble 1.0 ECD_02393 polyphosphate kinase, component of RNA degradosome low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03669 Soluble lytic murein transglycosylase 1.00 OHPLBJKB_01225 Polyphosphate kinase low > 73
Escherichia coli BW25113 1.00 b4392 slt soluble lytic murein transglycosylase (VIMSS) 1.00 b2501 ppk polyphosphate kinase (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_11170 sltY murein transglycosylase 1.00 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.62 32
Escherichia coli ECRC98 1.00 JDDGAC_14765 sltY murein transglycosylase 1.00 JDDGAC_25745 ppk1 polyphosphate kinase 1 low > 86
Escherichia coli ECRC101 1.00 MCAODC_01685 sltY murein transglycosylase 1.00 MCAODC_12330 ppk1 polyphosphate kinase 1 low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS25210 murein transglycosylase 1.00 ECOLIN_RS14200 polyphosphate kinase 1 low > 55
Escherichia coli ECRC62 1.00 BNILDI_08095 sltY murein transglycosylase 1.00 BNILDI_12260 ppk1 polyphosphate kinase 1 low > 75
Escherichia coli ECRC102 1.00 NIAGMN_09020 sltY murein transglycosylase 1.00 NIAGMN_19570 ppk1 polyphosphate kinase 1
Escherichia coli ECOR27 1.00 NOLOHH_03500 sltY murein transglycosylase 1.00 NOLOHH_13450 ppk1 polyphosphate kinase 1 low > 75
Escherichia coli ECOR38 1.00 HEPCGN_09175 sltY murein transglycosylase 1.00 HEPCGN_20965 ppk1 polyphosphate kinase 1 low > 87
Escherichia fergusonii Becca 1.00 EFB2_04052 Soluble lytic murein transglycosylase 1.00 EFB2_01397 Polyphosphate kinase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_16985 sltY murein transglycosylase 1.00 KEDOAH_06420 ppk1 polyphosphate kinase 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF1060 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.94 GFF2167 Polyphosphate kinase (EC 2.7.4.1) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_3602 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.95 EX28DRAFT_0166 polyphosphate kinase 1 low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_00699 Soluble lytic murein transglycosylase 0.95 MPMX20_03356 Polyphosphate kinase low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS04185 murein transglycosylase 0.92 BWI76_RS20995 RNA degradosome polyphosphate kinase low > 92
Erwinia tracheiphila SCR3 0.66 LU632_RS02575 sltY murein transglycosylase 0.87 LU632_RS08260 ppk1 polyphosphate kinase 1 low > 74
Pantoea sp. MT58 0.65 IAI47_16260 murein transglycosylase 0.84 IAI47_05155 polyphosphate kinase 1 0.22 69
Serratia liquefaciens MT49 0.65 IAI46_02985 murein transglycosylase 0.86 IAI46_18915 polyphosphate kinase 1 low > 86
Rahnella sp. WP5 0.63 EX31_RS03985 murein transglycosylase 0.85 EX31_RS22680 polyphosphate kinase 1 low > 89
Pectobacterium carotovorum WPP14 0.61 HER17_RS02750 murein transglycosylase 0.83 HER17_RS06425 polyphosphate kinase 1 low > 75
Dickeya dadantii 3937 0.58 DDA3937_RS18455 murein transglycosylase 0.83 DDA3937_RS15150 polyphosphate kinase 1 low > 74
Dickeya dianthicola 67-19 0.58 HGI48_RS18385 murein transglycosylase 0.82 HGI48_RS15225 polyphosphate kinase 1 low > 71
Dickeya dianthicola ME23 0.58 DZA65_RS19525 murein transglycosylase 0.83 DZA65_RS16045 polyphosphate kinase 1 low > 75
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_03655 murein transglycosylase 0.66 CSW01_03780 polyphosphate kinase 1 0.66 21
Shewanella loihica PV-4 0.25 Shew_2125 lytic transglycosylase, catalytic (RefSeq) 0.55 Shew_3079 polyphosphate kinase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.24 Sama_1895 soluble lytic murein transglycosylase, putative (RefSeq) 0.55 Sama_2011 polyphosphate kinase (RefSeq) low > 62
Pseudomonas sp. S08-1 0.23 OH686_21900 Soluble lytic murein transglycosylase 0.29 OH686_13995 polyphosphate kinase 1 low > 80
Pseudomonas stutzeri RCH2 0.23 Psest_1844 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.29 Psest_3732 polyphosphate kinase 1 low > 67
Shewanella sp. ANA-3 0.22 Shewana3_2236 lytic transglycosylase, catalytic (RefSeq) 0.55 Shewana3_2417 polyphosphate kinase (RefSeq) low > 73
Pseudomonas simiae WCS417 0.22 PS417_07550 lytic transglycosylase 0.29 PS417_27435 polyphosphate kinase low > 88
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_00530 lytic transglycosylase 0.29 AO353_08885 polyphosphate kinase low > 101
Pseudomonas fluorescens SBW25-INTG 0.22 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.29 PFLU_RS29095 polyphosphate kinase 1 low > 109
Pseudomonas fluorescens SBW25 0.22 PFLU_RS07630 transglycosylase SLT domain-containing protein 0.29 PFLU_RS29095 polyphosphate kinase 1 low > 109
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_2294 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.28 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) low > 103
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_02350 lytic transglycosylase 0.28 AO356_12895 polyphosphate kinase low > 104
Pseudomonas sp. RS175 0.21 PFR28_01106 Soluble lytic murein transglycosylase 0.28 PFR28_04345 Polyphosphate kinase low > 88
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_4045 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.29 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) low > 87
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_3898 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.29 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) low > 87
Pseudomonas putida KT2440 0.21 PP_2130 putative Soluble lytic transglycosylase 0.29 PP_5217 Polyphosphate kinase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_3295 SLT 0.29 Psyr_0293 Polyphosphate kinase low > 86
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_3295 SLT 0.29 Psyr_0293 Polyphosphate kinase low > 86
Alteromonas macleodii MIT1002 0.17 MIT1002_00576 Soluble lytic murein transglycosylase precursor 0.52 MIT1002_00872 Polyphosphate kinase low > 70
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_1444 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.28 B158DRAFT_2312 polyphosphate kinase 1 low > 40
Dyella japonica UNC79MFTsu3.2 0.16 ABZR86_RS12745 transglycosylase SLT domain-containing protein 0.28 ABZR86_RS07490 polyphosphate kinase 1 low > 74
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS07245 transglycosylase SLT domain-containing protein 0.29 LRK54_RS16000 polyphosphate kinase 1 low > 59
Rhodanobacter denitrificans MT42 0.16 LRK55_RS06980 transglycosylase SLT domain-containing protein 0.29 LRK55_RS15755 polyphosphate kinase 1 low > 63
Rhodanobacter sp. FW510-T8 0.15 OKGIIK_16395 Lytic transglycosylase 0.28 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase low > 52
Xanthomonas campestris pv. campestris strain 8004 0.15 Xcc-8004.961.1 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.26 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) low > 74
Lysobacter sp. OAE881 0.14 ABIE51_RS19070 transglycosylase SLT domain-containing protein 0.26 ABIE51_RS14230 polyphosphate kinase 1 low > 62
Paraburkholderia sabiae LMG 24235 0.14 QEN71_RS28635 lytic transglycosylase domain-containing protein 0.26 QEN71_RS04860 polyphosphate kinase 1 low > 153
Burkholderia phytofirmans PsJN 0.13 BPHYT_RS18610 lytic transglycosylase 0.26 BPHYT_RS14110 polyphosphate kinase low > 109
Paraburkholderia graminis OAS925 0.13 ABIE53_000044 soluble lytic murein transglycosylase 0.26 ABIE53_002988 polyphosphate kinase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.13 H281DRAFT_05816 soluble lytic murein transglycosylase 0.26 H281DRAFT_04418 polyphosphate kinase low > 103
Dechlorosoma suillum PS 0.12 Dsui_0683 soluble lytic murein transglycosylase-like protein 0.27 Dsui_2814 polyphosphate kinase 1 low > 51
Ralstonia sp. UNC404CL21Col 0.11 ABZR87_RS04885 lytic transglycosylase domain-containing protein 0.28 ABZR87_RS14065 polyphosphate kinase 1 low > 80
Ralstonia solanacearum PSI07 0.11 RPSI07_RS23510 lytic transglycosylase 0.27 RPSI07_RS15330 polyphosphate kinase 1 low > 81
Cupriavidus basilensis FW507-4G11 0.11 RR42_RS01405 lytic transglycosylase 0.27 RR42_RS13435 polyphosphate kinase low > 128
Variovorax sp. OAS795 0.11 ABID97_RS06595 transglycosylase SLT domain-containing protein 0.24 ABID97_RS14575 polyphosphate kinase 1 low > 91
Castellaniella sp019104865 MT123 0.11 ABCV34_RS13560 transglycosylase SLT domain-containing protein 0.24 ABCV34_RS15580 polyphosphate kinase 1 low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.10 GFF1614 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.23 GFF4226 Polyphosphate kinase (EC 2.7.4.1) low > 90
Acinetobacter radioresistens SK82 0.10 MPMX26_02666 Soluble lytic murein transglycosylase 0.27 MPMX26_02335 Polyphosphate kinase low > 36

Not shown: 1 genomes with orthologs for ECD_04268 only; 34 genomes with orthologs for ECD_02393 only