| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 1.0 | ECD_02203 | | NADH:ubiquinone oxidoreductase, membrane subunit L | 0.53 | 12 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OHPLBJKB_01428 | | NADH-quinone oxidoreductase subunit L | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 1.00 | b2278 | nuoL | NADH dehydrogenase subunit L (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | BNILDI_13430 | nuoL | NADH-quinone oxidoreductase subunit L | low | > 75 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NOLOHH_14510 | nuoL | NADH-quinone oxidoreductase subunit L | low | > 75 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | ECOLIN_RS13235 | | NADH-quinone oxidoreductase subunit L | low | > 55 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NIAGMN_20660 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OKFHMN_22890 | nuoL | NADH-quinone oxidoreductase subunit L | low | > 80 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | JDDGAC_26855 | nuoL | NADH-quinone oxidoreductase subunit L | low | > 86 |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | MCAODC_13930 | nuoL | NADH-quinone oxidoreductase subunit L | low | > 87 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | KEDOAH_05305 | nuoL | NADH-quinone oxidoreductase subunit L | — | — |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | HEPCGN_22095 | nuoL | NADH-quinone oxidoreductase subunit L | low | > 87 |
| Escherichia fergusonii Becca | 0.98 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | EFB2_01581 | | NADH-quinone oxidoreductase subunit L | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.85 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.94 | GFF1881 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.80 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.93 | EX28DRAFT_0332 | | proton-translocating NADH-quinone oxidoreductase, chain L | low | > 76 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.93 | MPMX20_03208 | | NADH-quinone oxidoreductase subunit L | low | > 85 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.92 | BWI76_RS20140 | | NADH-quinone oxidoreductase subunit L | low | > 92 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | DZA65_RS14935 | | NADH-quinone oxidoreductase subunit L | — | — |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | HGI48_RS14260 | | NADH-quinone oxidoreductase subunit L | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.78 | DDA3937_RS14285 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.80 | HER17_RS07175 | | NADH-quinone oxidoreductase subunit L | low | > 75 |
| Pantoea sp. MT58 | 0.64 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.83 | IAI47_06410 | | NADH-quinone oxidoreductase subunit L | low | > 76 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.83 | IAI46_17660 | | NADH-quinone oxidoreductase subunit L | low | > 86 |
| Rahnella sp. WP5 | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.81 | EX31_RS19385 | | NADH-quinone oxidoreductase subunit L | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.87 | LU632_RS08015 | nuoL | NADH-quinone oxidoreductase subunit L | low | > 74 |
| Shewanella oneidensis MR-1 | 0.43 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.65 | SO1011 | nuoL | NADH dehydrogenase I, L subunit (NCBI ptt file) | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.28 | ABCV34_RS08695 | | NADH-quinone oxidoreductase subunit L | — | — |
| Acinetobacter radioresistens SK82 | 0.34 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.55 | MPMX26_02545 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas simiae WCS417 | 0.34 | PS417_20155 | | 23S rRNA methyltransferase | 0.68 | PS417_16625 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas sp. S08-1 | 0.33 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.63 | OH686_00105 | | NADH-ubiquinone oxidoreductase chain L | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | PFLU_RS18665 | | NADH-quinone oxidoreductase subunit L | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.65 | Psyr_3207 | | NADH dehydrogenase subunit L | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.65 | Psyr_3207 | | NADH dehydrogenase subunit L | — | — |
| Pseudomonas sp. RS175 | 0.32 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | PFR28_02637 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.65 | Pf1N1B4_4030 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | low | > 87 |
| Dechlorosoma suillum PS | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.29 | Dsui_3039 | | proton-translocating NADH-quinone oxidoreductase, chain L | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_19055 | | 23S rRNA methyltransferase | 0.66 | AO356_22020 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.66 | Pf6N2E2_267 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | — | — |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.29 | Ac3H11_1441 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.28 | H281DRAFT_04578 | | NADH dehydrogenase subunit L | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.30 | RR42_RS05565 | | NADH:ubiquinone oxidoreductase subunit L | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_02715 | | 23S rRNA methyltransferase | 0.68 | AO353_27790 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pseudomonas putida KT2440 | 0.30 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.66 | PP_4129 | | NADH:ubiquinone oxidoreductase, membrane subunit L | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.66 | PfGW456L13_2623 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.29 | GFF3692 | | NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) | 0.44 | 55 |
| Synechococcus elongatus PCC 7942 | 0.21 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.25 | Synpcc7942_1977 | ndhF1 | NAD(P)H-quinone oxidoreductase subunit F | low | > 38 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.43 | CA264_04220 | | NADH-quinone oxidoreductase subunit L | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.19 | ABZR88_RS21250 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.34 | ABZR88_RS17115 | | NADH-quinone oxidoreductase subunit L | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.19 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.34 | CA265_RS23590 | | NADH-quinone oxidoreductase subunit L | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.19 | HMPREF1058_RS03720 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.24 | HMPREF1058_RS13300 | | NADH-quinone oxidoreductase subunit L | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.18 | ABI39_RS17490 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.24 | ABI39_RS08505 | | NADH-quinone oxidoreductase subunit L | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.18 | BACOVA_02267 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.25 | BACOVA_04855 | | proton-translocating NADH-quinone oxidoreductase, chain L | low | > 94 |
| Magnetospirillum magneticum AMB-1 | 0.17 | AMB_RS01660 | | class I SAM-dependent RNA methyltransferase | 0.29 | AMB_RS13955 | | NADH-quinone oxidoreductase subunit L | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT0643 | | RNA methyltransferase (NCBI ptt file) | 0.26 | BT4060 | | NADH dehydrogenase I, chain L (NCBI ptt file) | low | > 81 |
| Azospirillum brasilense Sp245 | 0.16 | AZOBR_RS01195 | | RNA methyltransferase | 0.29 | AZOBR_RS07220 | | NADH:ubiquinone oxidoreductase subunit L | — | — |
| Caulobacter crescentus NA1000 | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.27 | CCNA_02017 | | NADH-quinone oxidoreductase chain L | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.27 | CCNA_02017 | | NADH-quinone oxidoreductase chain L | low | > 67 |
| Azospirillum sp. SherDot2 | 0.16 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.30 | MPMX19_01735 | | NADH-quinone oxidoreductase subunit L | — | — |
| Rhodopseudomonas palustris CGA009 | 0.15 | TX73_004885 | | methyltransferase | 0.29 | TX73_015230 | | NADH-quinone oxidoreductase subunit L | — | — |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | 0.28 | ABIE40_RS07240 | | NADH-quinone oxidoreductase subunit L | — | — |
| Dinoroseobacter shibae DFL-12 | 0.15 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | 0.29 | Dshi_1327 | | proton-translocating NADH-quinone oxidoreductase, chain L (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.14 | SMc00974 | | RNA methyltransferase | 0.29 | SMc01925 | | NADH dehydrogenase subunit L | — | — |
| Agrobacterium fabrum C58 | 0.14 | Atu0735 | | RNA methyltransferase | 0.28 | Atu1281 | | NADH ubiquinone oxidoreductase chain L | — | — |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS22255 | | RNA methyltransferase | 0.27 | ABIE41_RS17885 | | NADH-quinone oxidoreductase subunit L | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.14 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | 0.28 | Ga0059261_0698 | | NADH dehydrogenase subunit L (EC 1.6.5.3) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | 0.28 | A4249_RS06350 | | NADH-quinone oxidoreductase subunit L | — | — |
| Rhodospirillum rubrum S1H | 0.12 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | 0.30 | Rru_A1566 | | NADH-plastoquinone oxidoreductase, chain 5 (NCBI) | — | — |
Not shown: 29 genomes with orthologs for ECD_02630 only; 3 genomes with orthologs for ECD_02203 only