Conservation of cofitness between DZA65_RS10285 and DZA65_RS17455 in Dickeya dianthicola ME23

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS10285 LysR family transcriptional regulator 1.0 DZA65_RS17455 nicotinamide-nucleotide amidase 0.45 12
Dickeya dianthicola 67-19 0.98 HGI48_RS09950 LysR family transcriptional regulator 0.99 HGI48_RS16360 nicotinamide-nucleotide amidase low > 71
Pseudomonas simiae WCS417 0.52 PS417_12530 LysR family transcriptional regulator 0.46 PS417_05810 damage-inducible protein CinA low > 88
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_23845 LysR family transcriptional regulator 0.42 AO353_16800 damage-inducible protein CinA low > 101
Pseudomonas sp. SVBP6 0.51 COO64_RS17325 LysR family transcriptional regulator 0.44 COO64_RS19925 CinA family protein low > 93
Pseudomonas orientalis W4I3 0.50 QF045_RS17385 LysR substrate-binding domain-containing protein 0.46 QF045_RS08725 nicotinamide-nucleotide amidohydrolase family protein low > 93
Pseudomonas lactucae CFBP13502 0.50 GEMAOFIL_02752 Nodulation protein D 2 0.46 GEMAOFIL_01332 Nicotinamide-nucleotide amidohydrolase PncC 0.64 6
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS13215 LysR family transcriptional regulator 0.46 PFLU_RS05880 CinA family protein low > 109
Pseudomonas fluorescens SBW25 0.48 PFLU_RS13215 LysR family transcriptional regulator 0.46 PFLU_RS05880 CinA family protein low > 109
Pseudomonas sp. RS175 0.48 PFR28_01664 Nodulation protein D 2 0.43 PFR28_00471 Nicotinamide-nucleotide amidohydrolase PncC low > 88
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_4709 Transcriptional regulator in custer with plant-induced nitrilase 0.44 Pf1N1B4_3142 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS — —
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_27895 LysR family transcriptional regulator 0.44 AO356_05675 damage-inducible protein CinA low > 104
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_2977 Transcriptional regulator in custer with plant-induced nitrilase 0.44 PfGW456L13_4669 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 87
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_747 Transcriptional regulator in custer with plant-induced nitrilase 0.44 Pf6N2E2_2994 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 103
Pseudomonas sp. DMC3 0.45 GFF3461 Nodulation protein D 2 0.44 GFF2110 Nicotinamide-nucleotide amidohydrolase PncC low > 89
Pseudomonas sp. S08-1 0.23 OH686_01015 Transcriptional regulator MexT 0.46 OH686_18200 Nicotinamide-nucleotide amidase low > 80
Pseudomonas segetis P6 0.23 ACVTMO_RS11960 LysR family transcriptional regulator 0.45 ACVTMO_RS16505 CinA family protein low > 75
Pseudomonas putida KT2440 0.23 PP_2826 Transcriptional regulator MexT 0.46 PP_1628 NMN amidohydrolase low > 96
Pseudomonas sp. BP01 0.23 JOY50_RS05565 LysR family transcriptional regulator 0.48 JOY50_RS23775 CinA family protein low > 84
Xanthobacter sp. DMC5 0.23 GFF2778 Nodulation protein D 2 0.37 GFF852 Nicotinamide-nucleotide amidohydrolase PncC — —
Paraburkholderia sabiae LMG 24235 0.22 QEN71_RS33740 LysR family transcriptional regulator 0.45 QEN71_RS27055 CinA family protein low > 153
Serratia liquefaciens MT49 0.22 IAI46_16085 LysR family transcriptional regulator 0.61 IAI46_03835 nicotinamide-nucleotide amidase low > 87
Pseudomonas aeruginosa PA14 0.22 IKLFDK_12240 multidrug efflux system transcriptional regulator MexT 0.46 IKLFDK_18470 damage-inducible protein CinA low > 98
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_2913 transcriptional regulator, LysR family 0.44 Psyr_1377 CinA, C-terminal low > 86
Pseudomonas aeruginosa PUPa3 0.22 DQ20_RS36070 mexT;inference=COORDINATES multidrug efflux system transcriptional regulator MexT 0.46 DQ20_RS42240 CinA family protein low > 101
Pseudomonas aeruginosa MRSN321 0.22 DY961_RS05195 mexT;inference=COORDINATES multidrug efflux system transcriptional regulator MexT 0.46 DY961_RS14890 CinA family protein low > 100
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_2913 transcriptional regulator, LysR family 0.44 Psyr_1377 CinA, C-terminal low > 86
Rhizobium sp. OAE497 0.21 ABIE40_RS05450 LysR family transcriptional regulator 0.39 ABIE40_RS09070 CinA family protein low > 107
Paraburkholderia graminis OAS925 0.21 ABIE53_004545 DNA-binding transcriptional LysR family regulator 0.46 ABIE53_003546 nicotinamide-nucleotide amidase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_01652 DNA-binding transcriptional regulator, LysR family 0.46 H281DRAFT_06305 nicotinamide-nucleotide amidase low > 103
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS22500 ABC transporter substrate-binding protein 0.45 RR42_RS17625 damage-inducible protein CinA low > 128
Marinobacter adhaerens HP15 0.20 HP15_2091 transcriptional regulator, LysR family protein 0.45 HP15_1046 competence damage-inducible protein A low > 73
Pantoea sp. MT58 0.20 IAI47_19765 LysR family transcriptional regulator 0.60 IAI47_04295 nicotinamide-nucleotide amidase low > 76
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS10685 LysR family transcriptional regulator 0.46 BPHYT_RS16895 competence damage-inducible protein A low > 109
Pantoea agglomerans CFBP13505 P0401 0.20 PagCFBP13505_RS07830 LysR family transcriptional regulator 0.59 PagCFBP13505_RS16675 nicotinamide-nucleotide amidase low > 74
Pseudomonas stutzeri RCH2 0.19 Psest_2146 Transcriptional regulator 0.45 Psest_2873 competence/damage-inducible protein CinA C-terminal domain low > 67
Acidovorax sp. GW101-3H11 0.19 Ac3H11_136 Transcriptional regulator, LysR family 0.38 Ac3H11_738 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 79
Azospirillum sp. SherDot2 0.19 MPMX19_05947 PCP degradation transcriptional activation protein 0.37 MPMX19_01107 Nicotinamide-nucleotide amidohydrolase PncC low > 112
Enterobacter sp. TBS_079 0.19 MPMX20_02333 Nodulation protein D 2 0.61 MPMX20_03581 Nicotinamide-nucleotide amidohydrolase PncC low > 85
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF5483 LysR-family transcriptional regulator 0.44 GFF3091 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 90
Alteromonas macleodii MIT1002 0.19 MIT1002_02832 Nodulation protein D 2 0.42 MIT1002_00954 Nicotinamide-nucleotide amidohydrolase PncC low > 70
Bosea sp. OAE506 0.19 ABIE41_RS06780 LysR family transcriptional regulator 0.27 ABIE41_RS16805 CinA family protein low > 77
Variovorax sp. SCN45 0.19 GFF1418 Transcriptional regulator, LysR family 0.44 GFF6273 Nicotinamide-nucleotide amidase (EC 3.5.1.42) low > 127
Sinorhizobium meliloti 1021 0.19 SMc00283 transcriptional regulator 0.39 SMc01039 hypothetical protein low > 103
Ralstonia solanacearum PSI07 0.19 RPSI07_RS18815 LysR family transcriptional regulator 0.47 RPSI07_RS11330 CinA family protein — —
Enterobacter asburiae PDN3 0.19 EX28DRAFT_1151 Transcriptional regulator 0.61 EX28DRAFT_2786 amidohydrolase, PncC family low > 76
Ralstonia solanacearum GMI1000 0.19 RS_RS05425 LysR family transcriptional regulator 0.47 RS_RS13860 CinA family protein — —
Ralstonia solanacearum IBSBF1503 0.19 RALBFv3_RS14645 LysR family transcriptional regulator 0.47 RALBFv3_RS05915 CinA family protein low > 76
Rahnella sp. WP5 0.19 EX31_RS17180 LysR family transcriptional regulator 0.61 EX31_RS07805 nicotinamide-nucleotide amidase — —
Ralstonia solanacearum UW163 0.19 UW163_RS12115 LysR family transcriptional regulator 0.47 UW163_RS07710 CinA family protein — —
Pectobacterium carotovorum WPP14 0.18 HER17_RS04190 LysR family transcriptional regulator 0.69 HER17_RS05040 nicotinamide-nucleotide amidase low > 75
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_07840 LysR family transcriptional regulator 0.47 CSW01_02870 CinA family protein low > 62
Klebsiella pneumoniae MKP103 0.18 KDGMDA_20505 LysR family transcriptional regulator 0.59 KDGMDA_02855 nicotinamide-nucleotide amidase — —
Klebsiella michiganensis M5al 0.17 BWI76_RS13225 hypothetical protein 0.59 BWI76_RS22185 hypothetical protein low > 92
Azospirillum brasilense Sp245 0.16 AZOBR_RS16250 LysR family transcriptional regulator 0.40 AZOBR_RS14405 competence damage-inducible protein A low > 97
Dickeya dadantii 3937 0.16 DDA3937_RS21355 LysR family transcriptional regulator 0.95 DDA3937_RS16250 nicotinamide-nucleotide amidase low > 74
Ralstonia sp. UNC404CL21Col 0.16 ABZR87_RS20840 LysR family transcriptional regulator 0.47 ABZR87_RS01580 CinA family protein low > 80
Erwinia amylovora T8 0.15 OLJFJH_04645 LysR family transcriptional regulator 0.56 OLJFJH_09570 nicotinamide-nucleotide amidase low > 58
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS07360 LysR family transcriptional regulator 0.51 ABZR86_RS00655 CinA family protein 0.34 33
Castellaniella sp019104865 MT123 0.14 ABCV34_RS02860 LysR family transcriptional regulator 0.39 ABCV34_RS10110 CinA family protein low > 48
Methylophilus sp. DMC18 0.13 GFF1899 Nodulation protein D 2 0.41 GFF839 Nicotinamide-nucleotide amidohydrolase PncC low > 43
Escherichia coli ECRC98 0.13 JDDGAC_14300 leuO transcriptional regulator LeuO 0.61 JDDGAC_24365 pncC nicotinamide-nucleotide amidase low > 87
Escherichia coli ECRC100 0.13 OKFHMN_10705 leuO transcriptional regulator LeuO 0.61 OKFHMN_20700 pncC nicotinamide-nucleotide amidase low > 79
Escherichia coli ECRC102 0.13 NIAGMN_08555 leuO transcriptional regulator LeuO 0.61 NIAGMN_18470 pncC nicotinamide-nucleotide amidase low > 80
Escherichia coli ECRC101 0.13 MCAODC_01220 leuO transcriptional regulator LeuO 0.61 MCAODC_11225 pncC nicotinamide-nucleotide amidase low > 87
Escherichia coli ECRC99 0.13 KEDOAH_17450 leuO transcriptional regulator LeuO 0.61 KEDOAH_07435 pncC nicotinamide-nucleotide amidase — —
Escherichia coli ECOR27 0.13 NOLOHH_03050 leuO transcriptional regulator LeuO 0.61 NOLOHH_12540 pncC nicotinamide-nucleotide amidase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.13 GFF162 Probable transcriptional activator for leuABCD operon 0.62 GFF4694 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 78
Caulobacter crescentus NA1000 0.11 CCNA_02227 LysR-family transcriptional regulator 0.40 CCNA_01811 competence/damage-inducible protein CinA low > 66
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_02227 LysR-family transcriptional regulator 0.40 CCNA_01811 competence/damage-inducible protein CinA low > 67

Not shown: 9 genomes with orthologs for DZA65_RS10285 only; 30 genomes with orthologs for DZA65_RS17455 only