Conservation of cofitness between CSW01_13305 and CSW01_07625 in Vibrio cholerae E7946 ATCC 55056

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13305 shikimate kinase 1.0 CSW01_07625 sulfurtransferase FdhD 0.63 6
Serratia liquefaciens MT49 0.83 IAI46_23705 shikimate kinase AroK 0.12 IAI46_00205 formate dehydrogenase accessory sulfurtransferase FdhD — —
Enterobacter sp. TBS_079 0.82 MPMX20_04279 Shikimate kinase 1 0.10 MPMX20_04574 Sulfur carrier protein FdhD low > 85
Erwinia amylovora T8 0.82 OLJFJH_04095 shikimate kinase AroK 0.10 OLJFJH_05050 formate dehydrogenase accessory sulfurtransferase FdhD — —
Enterobacter asburiae PDN3 0.82 EX28DRAFT_4152 shikimate kinase (EC 2.7.1.71) 0.10 EX28DRAFT_4379 formate dehydrogenase family accessory protein FdhD low > 76
Pantoea sp. MT58 0.81 IAI47_01890 shikimate kinase AroK 0.12 IAI47_18740 formate dehydrogenase accessory sulfurtransferase FdhD — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS21705 shikimate kinase AroK 0.12 PagCFBP13505_RS15775 formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_00313 Shikimate kinase 1 0.11 OHPLBJKB_04155 Sulfur carrier protein FdhD — —
Escherichia coli BW25113 0.81 b3390 aroK shikimate kinase I (NCBI) 0.11 b3895 fdhD formate dehydrogenase accessory protein (NCBI) low > 76
Escherichia coli ECRC62 0.81 BNILDI_02620 aroK shikimate kinase AroK 0.11 BNILDI_05455 fdhD formate dehydrogenase accessory sulfurtransferase FdhD — —
Rahnella sp. WP5 0.81 EX31_RS04725 shikimate kinase AroK 0.10 EX31_RS05780 formate dehydrogenase accessory sulfurtransferase FdhD low > 89
Escherichia coli Nissle 1917 0.81 ECOLIN_RS19365 shikimate kinase AroK 0.11 ECOLIN_RS22460 formate dehydrogenase accessory sulfurtransferase FdhD — —
Escherichia fergusonii Becca 0.81 EFB2_00438 Shikimate kinase 1 0.11 EFB2_04720 Sulfur carrier protein FdhD low > 86
Escherichia coli ECOR38 0.81 HEPCGN_15930 aroK shikimate kinase AroK 0.11 HEPCGN_12585 fdhD formate dehydrogenase accessory sulfurtransferase FdhD low > 88
Escherichia coli BL21 0.81 ECD_03242 shikimate kinase I 0.11 ECD_03780 formate dehydrogenase formation protein low > 61
Escherichia coli ECOR27 0.81 NOLOHH_08900 aroK shikimate kinase AroK 0.11 NOLOHH_06070 fdhD formate dehydrogenase accessory sulfurtransferase FdhD low > 76
Shewanella amazonensis SB2B 0.79 Sama_3368 aroK shikimate kinase I (RefSeq) 0.61 Sama_3619 formate dehydrogenase accessory protein FdhD, putative (RefSeq) — —
Shewanella oneidensis MR-1 0.79 SO0286 aroK shikimate kinase (NCBI ptt file) 0.61 SO4503 formate dehydrogenase accessory protein FdhD, putative (NCBI ptt file) — —
Shewanella sp. ANA-3 0.79 Shewana3_3894 aroK shikimate kinase I (RefSeq) 0.64 Shewana3_3910 formate dehydrogenase accessory protein FdhD, putative (RefSeq) — —
Shewanella loihica PV-4 0.78 Shew_0213 shikimate kinase I (RefSeq) 0.62 Shew_0053 formate dehydrogenase, subunit FdhD (RefSeq) — —
Alteromonas macleodii MIT1002 0.75 MIT1002_00448 Shikimate kinase 1 0.11 MIT1002_01712 formate dehydrogenase accessory protein — —
Dickeya dadantii 3937 0.75 DDA3937_RS19550 shikimate kinase AroK 0.10 DDA3937_RS20955 formate dehydrogenase accessory sulfurtransferase FdhD — —
Dickeya dianthicola ME23 0.75 DZA65_RS20765 shikimate kinase AroK 0.10 DZA65_RS00290 formate dehydrogenase accessory sulfurtransferase FdhD — —
Dickeya dianthicola 67-19 0.75 HGI48_RS19680 shikimate kinase AroK 0.10 HGI48_RS00290 formate dehydrogenase accessory sulfurtransferase FdhD — —
Pseudomonas aeruginosa PA14 0.52 IKLFDK_28335 Shikimate kinase 0.09 IKLFDK_27585 formate dehydrogenase accessory sulfurtransferase FdhD — —
Marinobacter adhaerens HP15 0.51 HP15_479 shikimate kinase I 0.40 HP15_4131 formate dehydrogenase family accessory protein FdhD — —
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_12500 shikimate kinase 0.10 AO353_11830 formate dehydrogenase family accessory protein FdhD low > 101
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_276 Shikimate kinase I (EC 2.7.1.71) 0.10 PfGW456L13_408 Formate dehydrogenase chain D (EC 1.2.1.2) low > 87
Pseudomonas sp. RS175 0.48 PFR28_05012 Shikimate kinase 1 0.09 PFR28_04882 Sulfur carrier protein FdhD — —
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_1538 Shikimate kinase I (EC 2.7.1.71) 0.09 Pf1N1B4_1673 Formate dehydrogenase chain D (EC 1.2.1.2) — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS12700 shikimate kinase 0.10 ABCV34_RS00240 formate dehydrogenase accessory sulfurtransferase FdhD — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS28040 shikimate kinase 0.10 QEN71_RS02080 formate dehydrogenase accessory sulfurtransferase FdhD low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_003741 shikimate kinase 0.10 ABIE53_000787 FdhD protein — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS17890 shikimate kinase 0.11 BPHYT_RS03240 formate dehydrogenase accessory protein FdhD low > 109
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_05614 shikimate kinase 0.11 H281DRAFT_06437 FdhD protein — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS19010 shikimate kinase 0.47 RR42_RS15950 formate dehydrogenase low > 128
Dechlorosoma suillum PS 0.45 Dsui_1094 shikimate kinase 0.13 Dsui_3279 formate dehydrogenase family accessory protein FdhD low > 51
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS02595 shikimate kinase 0.48 ABZR87_RS16190 formate dehydrogenase accessory sulfurtransferase FdhD low > 80
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS10475 shikimate kinase 0.12 ABZR86_RS03590 formate dehydrogenase accessory sulfurtransferase FdhD low > 74
Ralstonia solanacearum PSI07 0.42 RPSI07_RS10295 shikimate kinase 0.48 RPSI07_RS13035 sufurtransferase FdhD low > 81
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS06940 shikimate kinase 0.47 RALBFv3_RS04335 sufurtransferase FdhD low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS06675 shikimate kinase 0.47 UW163_RS09335 sufurtransferase FdhD — —
Ralstonia solanacearum GMI1000 0.41 RS_RS14885 shikimate kinase 0.48 RS_RS11885 sufurtransferase FdhD low > 80
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.1616.1 Shikimate kinase I (EC 2.7.1.71) 0.12 Xcc-8004.2194.1 Formate dehydrogenase chain D (EC 1.2.1.2) low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1332 Shikimate kinase I (EC 2.7.1.71) 0.44 GFF1188 Formate dehydrogenase chain D (EC 1.2.1.2) low > 90
Variovorax sp. OAS795 0.35 ABID97_RS23260 shikimate kinase 0.45 ABID97_RS07590 formate dehydrogenase accessory sulfurtransferase FdhD — —
Magnetospirillum magneticum AMB-1 0.34 AMB_RS19870 shikimate kinase 0.39 AMB_RS13415 sulfurtransferase FdhD — —
Bosea sp. OAE506 0.33 ABIE41_RS06090 shikimate kinase 0.40 ABIE41_RS23440 formate dehydrogenase accessory sulfurtransferase FdhD — —
Rhizobium sp. OAE497 0.33 ABIE40_RS17675 shikimate kinase 0.12 ABIE40_RS17840 formate dehydrogenase accessory sulfurtransferase FdhD — —
Acidovorax sp. GW101-3H11 0.32 Ac3H11_3449 Shikimate kinase I (EC 2.7.1.71) 0.48 Ac3H11_3797 Formate dehydrogenase chain D (EC 1.2.1.2) low > 79
Sinorhizobium meliloti 1021 0.32 SMc00695 shikimate kinase 0.11 SMc03085 formate dehydrogenase accessory protein — —
Dinoroseobacter shibae DFL-12 0.31 Dshi_1609 Shikimate kinase (RefSeq) 0.38 Dshi_3282 formate dehydrogenase subunit FdhD (RefSeq) — —
Variovorax sp. SCN45 0.30 GFF5324 Shikimate kinase I (EC 2.7.1.71) 0.10 GFF5642 Sulfur carrier protein FdhD — —
Mycobacterium tuberculosis H37Rv 0.28 Rv2539c Shikimate kinase AroK (SK) 0.13 Rv2899c Possible FdhD protein homolog — —

Not shown: 45 genomes with orthologs for CSW01_13305 only; 11 genomes with orthologs for CSW01_07625 only