Conservation of cofitness between CSW01_03755 and CSW01_06735 in Vibrio cholerae E7946 ATCC 55056

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03755 recombination-associated protein RdgC 1.0 CSW01_06735 methylisocitrate lyase 0.78 16
Dickeya dianthicola 67-19 0.59 HGI48_RS05465 recombination-associated protein RdgC 0.14 HGI48_RS06990 phosphoenolpyruvate mutase — —
Dickeya dianthicola ME23 0.59 DZA65_RS05790 recombination-associated protein RdgC 0.14 DZA65_RS07470 phosphoenolpyruvate mutase low > 75
Escherichia coli ECOR27 0.57 NOLOHH_01500 rdgC recombination-associated protein RdgC 0.62 NOLOHH_01775 prpB methylisocitrate lyase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_03282 Recombination-associated protein RdgC 0.62 OHPLBJKB_03339 2-methylisocitrate lyase low > 74
Escherichia coli Nissle 1917 0.57 ECOLIN_RS02385 recombination-associated protein RdgC 0.61 ECOLIN_RS02150 methylisocitrate lyase low > 55
Escherichia coli ECRC62 0.57 BNILDI_22915 rdgC recombination-associated protein RdgC 0.62 BNILDI_23190 prpB methylisocitrate lyase low > 75
Escherichia coli ECOR38 0.57 HEPCGN_07210 rdgC recombination-associated protein RdgC 0.62 HEPCGN_07485 prpB methylisocitrate lyase low > 88
Escherichia coli BW25113 0.57 b0393 rdgC recombination associated protein (NCBI) 0.62 b0331 prpB 2-methylisocitrate lyase (NCBI) low > 76
Escherichia fergusonii Becca 0.57 EFB2_03663 Recombination-associated protein RdgC 0.62 EFB2_03706 2-methylisocitrate lyase low > 86
Escherichia coli BL21 0.57 ECD_00342 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function 0.62 ECD_00286 2-methylisocitrate lyase low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF4290 DNA recombination-dependent growth factor C 0.59 GFF4263 Methylisocitrate lyase (EC 4.1.3.30) low > 78
Escherichia coli ECRC101 0.57 MCAODC_27795 rdgC recombination-associated protein RdgC 0.61 MCAODC_28130 prpB methylisocitrate lyase low > 87
Escherichia coli ECRC100 0.57 OKFHMN_08570 rdgC recombination-associated protein RdgC 0.61 OKFHMN_08900 prpB methylisocitrate lyase low > 79
Escherichia coli ECRC102 0.57 NIAGMN_06625 rdgC recombination-associated protein RdgC 0.61 NIAGMN_06955 prpB methylisocitrate lyase low > 80
Escherichia coli ECRC98 0.57 JDDGAC_12225 rdgC recombination-associated protein RdgC 0.61 JDDGAC_12555 prpB methylisocitrate lyase low > 87
Escherichia coli ECRC99 0.57 KEDOAH_19395 rdgC recombination-associated protein RdgC 0.61 KEDOAH_19065 prpB methylisocitrate lyase — —
Shewanella amazonensis SB2B 0.49 Sama_1072 rdgC recombination associated protein (RefSeq) 0.61 Sama_3294 prpB 2-methylisocitrate lyase (RefSeq) low > 62
Shewanella sp. ANA-3 0.49 Shewana3_2881 rdgC recombination associated protein (RefSeq) 0.63 Shewana3_3825 prpB 2-methylisocitrate lyase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.49 SO1556 conserved hypothetical protein (NCBI ptt file) 0.63 SO0345 prpB methylisocitrate lyase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.48 Shew_2751 rdgC recombination associated protein (RefSeq) 0.67 Shew_1820 prpB 2-methylisocitrate lyase (RefSeq) low > 60
Pseudomonas aeruginosa MRSN321 0.44 DY961_RS00580 rdgC;inference=COORDINATES recombination-associated protein RdgC 0.65 DY961_RS08515 prpB;go_function=methylisocitrate methylisocitrate lyase low > 100
Pseudomonas aeruginosa PA14 0.44 IKLFDK_16705 recombination-associated protein RdgC 0.65 IKLFDK_03445 methylisocitrate lyase low > 98
Pseudomonas aeruginosa PUPa3 0.44 DQ20_RS40455 rdgC;inference=COORDINATES recombination-associated protein RdgC 0.65 DQ20_RS44335 prpB;go_function=methylisocitrate methylisocitrate lyase low > 101
Pseudomonas putida KT2440 0.43 PP_1702 Recombination-associated protein RdgC 0.63 PP_2334 2-methylisocitrate lyase low > 96
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_19265 recombination-associated protein RdgC 0.64 AO356_20865 2-methylisocitrate lyase low > 104
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_1588 Putative exonuclease, RdgC 0.62 Psyr_2085 methylisocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_1588 Putative exonuclease, RdgC 0.62 Psyr_2085 methylisocitrate lyase low > 86
Pseudomonas sp. BP01 0.43 JOY50_RS28065 rdgC recombination-associated protein RdgC 0.63 JOY50_RS25750 prpB methylisocitrate lyase low > 84
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5768 DNA recombination-dependent growth factor C 0.63 Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) low > 103
Pseudomonas sp. S08-1 0.42 OH686_19640 DNA recombination-dependent growth factor RdgC 0.56 OH686_01690 methylisocitrate lyase low > 80
Pseudomonas sp. RS175 0.42 PFR28_03182 Recombination-associated protein RdgC 0.64 PFR28_02928 2-methylisocitrate lyase low > 88
Pseudomonas sp. SVBP6 0.42 COO64_RS07115 rdgC recombination-associated protein RdgC 0.63 COO64_RS09900 prpB methylisocitrate lyase low > 93
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_02515 recombination-associated protein RdgC 0.64 AO353_00900 2-methylisocitrate lyase low > 101
Pseudomonas segetis P6 0.41 MPMX49_01735 Recombination-associated protein RdgC 0.62 MPMX49_02628 2-methylisocitrate lyase low > 75
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_3731 DNA recombination-dependent growth factor C 0.63 Pf1N1B4_3819 Methylisocitrate lyase (EC 4.1.3.30) — —
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_4216 DNA recombination-dependent growth factor C 0.63 PfGW456L13_4118 Methylisocitrate lyase (EC 4.1.3.30) low > 87
Pseudomonas sp. DMC3 0.41 GFF2574 Recombination-associated protein RdgC 0.63 GFF5230 2-methylisocitrate lyase low > 89
Marinobacter adhaerens HP15 0.40 HP15_1221 recombination-associated protein rdgC 0.68 HP15_1932 methylisocitrate lyase 2 — —
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS09255 recombination-associated protein RdgC 0.62 PFLU_RS22690 methylisocitrate lyase 0.17 73
Pseudomonas fluorescens SBW25 0.40 PFLU_RS09255 recombination-associated protein RdgC 0.62 PFLU_RS22690 methylisocitrate lyase low > 109
Pseudomonas lactucae CFBP13502 0.40 GEMAOFIL_01972 Recombination-associated protein RdgC 0.62 GEMAOFIL_04361 2-methylisocitrate lyase low > 96
Pseudomonas orientalis W4I3 0.40 QF045_RS11910 recombination-associated protein RdgC 0.63 QF045_RS22905 methylisocitrate lyase low > 93
Pseudomonas simiae WCS417 0.40 PS417_09245 recombinase RdgC 0.63 PS417_21080 2-methylisocitrate lyase — —
Pseudomonas stutzeri RCH2 0.40 Psest_1532 DNA recombination-dependent growth factor C 0.63 Psest_2321 methylisocitrate lyase low > 67
Alteromonas macleodii MIT1002 0.37 MIT1002_00749 Recombination-associated protein RdgC 0.67 MIT1002_03129 Methylisocitrate lyase low > 70
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS21640 recombinase RdgC 0.63 HSERO_RS15660 2-methylisocitrate lyase — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS04480 recombination-associated protein RdgC 0.58 ABCV34_RS01670 methylisocitrate lyase — —
Lysobacter sp. OAE881 0.31 ABIE51_RS01300 recombination-associated protein RdgC 0.57 ABIE51_RS06015 methylisocitrate lyase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS16505 recombination-associated protein RdgC 0.56 ABZR86_RS08480 methylisocitrate lyase — —
Ralstonia solanacearum UW163 0.30 UW163_RS01150 recombination-associated protein RdgC 0.63 UW163_RS11055 methylisocitrate lyase — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS12420 recombination-associated protein RdgC 0.63 RALBFv3_RS02670 methylisocitrate lyase low > 76
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10690 recombination-associated protein RdgC 0.58 LRK54_RS00695 methylisocitrate lyase — —
Rhodanobacter denitrificans MT42 0.30 LRK55_RS10330 recombination-associated protein RdgC 0.58 LRK55_RS00470 methylisocitrate lyase — —
Rhodanobacter sp000427505 FW510-R12 0.30 LRK53_RS03480 recombination-associated protein RdgC 0.60 LRK53_RS09460 methylisocitrate lyase — —
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS18475 recombination-associated protein RdgC 0.62 ABZR87_RS14590 methylisocitrate lyase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5210.1 DNA recombination-dependent growth factor C 0.58 Xcc-8004.3981.1 Methylisocitrate lyase (EC 4.1.3.30) — —
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS20685 recombination-associated protein RdgC 0.62 QEN71_RS17555 methylisocitrate lyase low > 153
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_13190 rdgC recombination-associated protein RdgC 0.59 OKGIIK_06565 prpB methylisocitrate lyase — —
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_00319 recombination associated protein RdgC 0.30 H281DRAFT_06209 carboxyvinyl-carboxyphosphonate phosphorylmutase low > 103
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_1192 DNA recombination-dependent growth factor C 0.64 B158DRAFT_1343 methylisocitrate lyase 0.58 9
Ralstonia solanacearum GMI1000 0.29 RS_RS03100 recombination-associated protein RdgC 0.62 RS_RS10050 methylisocitrate lyase low > 80
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS17820 recombinase RdgC 0.62 RR42_RS11260 Methylisocitrate lyase (EC 4.1.3.30) (from data) low > 128
Ralstonia solanacearum PSI07 0.28 RPSI07_RS20910 recombination-associated protein RdgC 0.62 RPSI07_RS14645 methylisocitrate lyase low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF5355 DNA recombination-dependent growth factor C 0.30 GFF3032 Methylisocitrate lyase (EC 4.1.3.30) — —

Not shown: 17 genomes with orthologs for CSW01_03755 only; 11 genomes with orthologs for CSW01_06735 only