| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_06790 | | maleylacetoacetate isomerase | 1.0 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.79 | 16 |
| Shewanella sp. ANA-3 | 0.57 | Shewana3_2777 | | maleylacetoacetate isomerase (RefSeq) | 0.60 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Pseudomonas segetis P6 | 0.54 | MPMX49_02853 | | Maleylpyruvate isomerase | 0.53 | MPMX49_03922 | | Ribosomal large subunit pseudouridine synthase D | low | > 75 |
| Lysobacter sp. OAE881 | 0.54 | ABIE51_RS04250 | | maleylacetoacetate isomerase | 0.49 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.54 | ABZR86_RS18680 | | maleylacetoacetate isomerase | 0.48 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_01149 | | Maleylpyruvate isomerase | 0.59 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Pseudomonas sp. S08-1 | 0.53 | OH686_21095 | | maleylacetoacetate isomerase | 0.53 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Shewanella loihica PV-4 | 0.53 | Shew_1439 | | maleylacetoacetate isomerase (RefSeq) | 0.60 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Acinetobacter baumannii LAC-4 | 0.53 | RR41_RS00340 | | maleylacetoacetate isomerase | 0.49 | RR41_RS15070 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 55 |
| Shewanella amazonensis SB2B | 0.52 | Sama_2218 | | maleylacetoacetate isomerase (RefSeq) | 0.59 | Sama_2605 | | pseudouridylate synthase (RefSeq) | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.52 | LRK53_RS04290 | | maleylacetoacetate isomerase | 0.47 | LRK53_RS05045 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Rhodanobacter denitrificans FW104-10B01 | 0.52 | LRK54_RS05735 | | maleylacetoacetate isomerase | 0.48 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.52 | LRK55_RS05490 | | maleylacetoacetate isomerase | 0.48 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 63 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_02378 | | Maleylpyruvate isomerase | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Ralstonia sp. UNC404CL21Col | 0.50 | ABZR87_RS06920 | | maleylacetoacetate isomerase | 0.38 | ABZR87_RS13315 | | RluA family pseudouridine synthase | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.50 | HSERO_RS05615 | | maleylacetoacetate isomerase | 0.35 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Rhodanobacter sp. FW510-T8 | 0.50 | OKGIIK_01115 | maiA | maleylacetoacetate isomerase | 0.46 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 53 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS13685 | | maleylacetoacetate isomerase | 0.33 | ABCV34_RS01885 | | RluA family pseudouridine synthase | low | > 48 |
| Ralstonia solanacearum PSI07 | 0.49 | RPSI07_RS22255 | | maleylacetoacetate isomerase | 0.39 | RPSI07_RS15970 | | RluA family pseudouridine synthase | low | > 81 |
| Kangiella aquimarina DSM 16071 | 0.48 | B158DRAFT_1449 | | maleylacetoacetate isomerase | 0.53 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | — | — |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS01895 | | maleylacetoacetate isomerase | 0.39 | RS_RS08205 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.48 | UW163_RS02530 | | maleylacetoacetate isomerase | 0.38 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.48 | RALBFv3_RS11050 | | maleylacetoacetate isomerase | 0.38 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_024280 | | maleylacetoacetate isomerase | 0.33 | TX73_001905 | | RluA family pseudouridine synthase | 0.34 | 28 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS19575 | | maleylacetoacetate isomerase | 0.69 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | low | > 92 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.4525.1 | | Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) | 0.51 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 74 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS12095 | | maleylacetoacetate isomerase | 0.29 | A4249_RS10060 | | RluA family pseudouridine synthase | — | — |
| Escherichia coli ECRC62 | 0.42 | BNILDI_14095 | maiA | maleylacetoacetate isomerase | 0.71 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Xanthobacter sp. DMC5 | 0.42 | GFF4529 | | Maleylpyruvate isomerase | 0.36 | GFF2508 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Escherichia coli ECRC101 | 0.42 | MCAODC_14655 | maiA | maleylacetoacetate isomerase | 0.70 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_04580 | maiA | maleylacetoacetate isomerase | 0.70 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_21370 | maiA | maleylacetoacetate isomerase | 0.70 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 80 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_23605 | maiA | maleylacetoacetate isomerase | 0.70 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 79 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_27560 | maiA | maleylacetoacetate isomerase | 0.70 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF4799 | | Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) | 0.35 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.41 | GFF3802 | | Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) | 0.70 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 78 |
| Variovorax sp. SCN45 | 0.41 | GFF806 | | Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) | 0.30 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.58 | 66 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_2306 | | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 79 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS12400 | | maleylacetoacetate isomerase | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_02062 | | Maleylpyruvate isomerase | 0.33 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_0507 | | maleylacetoacetate isomerase | 0.32 | Ga0059261_0664 | | pseudouridine synthase, RluA family | low | > 68 |
| Pseudomonas aeruginosa PA14 | 0.38 | IKLFDK_12145 | | maleylacetoacetate isomerase | 0.51 | IKLFDK_00810 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.37 | DQ20_RS55415 | maiA;go_function=maleylacetoacetate | maleylacetoacetate isomerase | 0.51 | DQ20_RS56195 | rluD;go_function=RNA | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.37 | DY961_RS05290 | maiA;go_function=maleylacetoacetate | maleylacetoacetate isomerase | 0.51 | DY961_RS23730 | rluD;go_function=RNA | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 100 |
| Pseudomonas sp. SVBP6 | 0.37 | COO64_RS03645 | maiA | maleylacetoacetate isomerase | 0.54 | COO64_RS11055 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 93 |
| Pseudomonas sp. BP01 | 0.37 | JOY50_RS15545 | maiA | maleylacetoacetate isomerase | 0.54 | JOY50_RS27130 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 84 |
| Sinorhizobium meliloti 1021 | 0.35 | SMc03206 | | maleylacetoacetate isomerase (glutathione transferase zeta 1) protein | 0.33 | SMc00647 | | ribosomal large subunit pseudouridine synthase | low | > 103 |
| Sphingobium sp. HT1-2 | 0.35 | GFF881 | | Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) | 0.37 | GFF4062 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 95 |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_03683 | | maleylpyruvate isomerase | 0.31 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_03683 | | maleylpyruvate isomerase | 0.31 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Pseudomonas sp. DMC3 | 0.33 | GFF1878 | | Maleylpyruvate isomerase | 0.54 | GFF4004 | | Ribosomal large subunit pseudouridine synthase D | low | > 89 |
| Pseudomonas orientalis W4I3 | 0.33 | QF045_RS08005 | | maleylacetoacetate isomerase | 0.54 | QF045_RS06805 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 93 |
| Pseudomonas putida KT2440 | 0.33 | PP_4619 | | Maleylacetoacetate isomerase | 0.53 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_1023 | | Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.33 | AO353_15560 | | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | 0.54 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.32 | PfGW456L13_4960 | | Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) | 0.54 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_5292 | | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | 0.54 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_16835 | | Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) | 0.55 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c00380 | | putative maleylacetoacetate isomerase | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Pseudomonas simiae WCS417 | 0.31 | PS417_05025 | | maleylacetoacetate isomerase | 0.54 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas lactucae CFBP13502 | 0.31 | GEMAOFIL_01212 | | Maleylpyruvate isomerase | 0.54 | GEMAOFIL_00969 | | Ribosomal large subunit pseudouridine synthase D | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS05095 | | maleylacetoacetate isomerase | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS05095 | | maleylacetoacetate isomerase | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_00223 | | Maleylpyruvate isomerase | 0.54 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Rhizobium sp. OAE497 | 0.12 | ABIE40_RS18710 | | glutathione S-transferase family protein | 0.36 | ABIE40_RS14790 | | RluA family pseudouridine synthase | low | > 107 |
Not shown: 7 genomes with orthologs for CSW01_06790 only; 48 genomes with orthologs for CSW01_03695 only