| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03145 | | polynucleotide adenylyltransferase PcnB | 1.0 | CSW01_03050 | | cytochrome b | 0.51 | 15 |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_03692 | | Poly(A) polymerase I precursor | 0.69 | MIT1002_00815 | | Cytochrome b/c1 | low | > 70 |
| Shewanella oneidensis MR-1 | 0.52 | SO0872 | pcnB | polyA polymerase (NCBI ptt file) | 0.73 | SO0609 | petB | ubiquinol-cytochrome c reductase, cytochrome b (NCBI ptt file) | 0.47 | 7 |
| Shewanella loihica PV-4 | 0.52 | Shew_3131 | | poly(A) polymerase (RefSeq) | 0.73 | Shew_0571 | | cytochrome b/b6 domain-containing protein (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_3406 | | poly(A) polymerase (RefSeq) | 0.73 | Shewana3_0602 | | cytochrome b/b6 domain-containing protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.50 | Sama_0778 | | tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) | 0.73 | Sama_3020 | | ubiquinol-cytochrome c reductase, cytochrome b (RefSeq) | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.48 | B158DRAFT_0058 | | poly(A) polymerase | 0.62 | B158DRAFT_2101 | | Cytochrome b subunit of the bc complex | low | > 40 |
| Pseudomonas sp. SVBP6 | 0.46 | COO64_RS15095 | | polynucleotide adenylyltransferase PcnB | 0.67 | COO64_RS11800 | | cytochrome bc complex cytochrome b subunit | low | > 93 |
| Pseudomonas sp. DMC3 | 0.45 | GFF4029 | | Poly(A) polymerase I | 0.66 | GFF4436 | | Cytochrome b | low | > 89 |
| Pseudomonas putida KT2440 | 0.45 | PP_4697 | | poly(A) polymerase | 0.66 | PP_1318 | | Cytochrome b | low | > 96 |
| Pseudomonas sp. BP01 | 0.45 | JOY50_RS27670 | | polynucleotide adenylyltransferase PcnB | 0.66 | JOY50_RS15210 | | cytochrome bc complex cytochrome b subunit | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.45 | GEMAOFIL_04931 | | Poly(A) polymerase I | 0.66 | GEMAOFIL_01037 | | Cytochrome b | low | > 96 |
| Pseudomonas segetis P6 | 0.45 | MPMX49_01223 | | Poly(A) polymerase I | 0.68 | MPMX49_03827 | | Cytochrome b | — | — |
| Pseudomonas sp. RS175 | 0.45 | PFR28_03719 | | Poly(A) polymerase I | 0.68 | PFR28_03605 | | Cytochrome b | — | — |
| Pseudomonas simiae WCS417 | 0.45 | PS417_23900 | | poly(A) polymerase | 0.66 | PS417_04160 | | cytochrome B | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS25740 | | polynucleotide adenylyltransferase PcnB | 0.66 | PFLU_RS04200 | | cytochrome bc complex cytochrome b subunit | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS25740 | | polynucleotide adenylyltransferase PcnB | 0.66 | PFLU_RS04200 | | cytochrome bc complex cytochrome b subunit | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_14395 | | poly(A) polymerase | 0.67 | AO353_15250 | | cytochrome B | 0.40 | 7 |
| Pseudomonas sp. S08-1 | 0.44 | OH686_17255 | | Poly(A) polymerase | 0.67 | OH686_08385 | | Ubiquinol-cytochrome C reductase, cytochrome B subunit | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.44 | DQ20_RS52655 | | polynucleotide adenylyltransferase PcnB | 0.68 | DQ20_RS56785 | | cytochrome bc complex cytochrome b subunit | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.44 | DY961_RS09375 | | polynucleotide adenylyltransferase PcnB | 0.68 | DY961_RS24325 | | cytochrome bc complex cytochrome b subunit | — | — |
| Pseudomonas orientalis W4I3 | 0.44 | QF045_RS26160 | | polynucleotide adenylyltransferase PcnB | 0.66 | QF045_RS07160 | | cytochrome bc complex cytochrome b subunit | low | > 93 |
| Marinobacter adhaerens HP15 | 0.44 | HP15_326 | | polyA polymerase | 0.65 | HP15_546 | | ubiquinol-cytochrome c reductase, cytochrome b | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_1523 | | Poly(A) polymerase (EC 2.7.7.19) | 0.68 | PfGW456L13_1635 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.44 | Pf6N2E2_5155 | | Poly(A) polymerase (EC 2.7.7.19) | 0.68 | Pf6N2E2_5338 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 103 |
| Pseudomonas aeruginosa PA14 | 0.44 | IKLFDK_29965 | | polynucleotide adenylyltransferase PcnB | 0.68 | IKLFDK_01940 | | cytochrome b | 0.58 | 14 |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_16070 | | poly(A) polymerase | 0.68 | AO356_17070 | | cytochrome B | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.44 | Pf1N1B4_2856 | | Poly(A) polymerase (EC 2.7.7.19) | 0.68 | Pf1N1B4_961 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 87 |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS00805 | | polynucleotide adenylyltransferase PcnB | 0.52 | ABZR86_RS09875 | | cytochrome bc complex cytochrome b subunit | low | > 74 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS08015 | | polynucleotide adenylyltransferase PcnB | 0.56 | ABIE51_RS15435 | | cytochrome bc complex cytochrome b subunit | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_03875 | pcnB | tRNA nucleotidyltransferase/poly(A) polymerase | 0.53 | OKGIIK_03010 | qcrB,petB | cytochrome b | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.42 | LRK53_RS13510 | | polynucleotide adenylyltransferase PcnB | 0.54 | LRK53_RS14830 | | cytochrome bc complex cytochrome b subunit | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.42 | LRK54_RS15105 | | polynucleotide adenylyltransferase PcnB | 0.55 | LRK54_RS13770 | | cytochrome bc complex cytochrome b subunit | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.3054.1 | | Poly(A) polymerase (EC 2.7.7.19) | 0.57 | Xcc-8004.2229.1 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.42 | LRK55_RS14820 | | polynucleotide adenylyltransferase PcnB | 0.55 | LRK55_RS13485 | | cytochrome bc complex cytochrome b subunit | low | > 63 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0998 | | poly(A) polymerase | 0.65 | Psest_3278 | | Cytochrome b subunit of the bc complex | — | — |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS00935 | | polynucleotide adenylyltransferase PcnB | 0.54 | ABZR87_RS02380 | | cytochrome bc complex cytochrome b subunit | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS05300 | | polynucleotide adenylyltransferase PcnB | 0.56 | RALBFv3_RS06725 | | cytochrome b | 0.66 | 40 |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS12000 | | polynucleotide adenylyltransferase PcnB | 0.55 | RPSI07_RS10510 | | cytochrome b | 0.63 | 15 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS13165 | | polynucleotide adenylyltransferase PcnB | 0.55 | RS_RS14670 | | cytochrome b | 0.71 | 16 |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS17235 | | poly(A) polymerase | 0.55 | RR42_RS18820 | | cytochrome B | low | > 128 |
| Methylophilus sp. DMC18 | 0.37 | GFF2604 | | Poly(A) polymerase I | 0.58 | GFF1578 | | Cytochrome b/c1 | — | — |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS08810 | | polynucleotide adenylyltransferase PcnB | 0.56 | ABCV34_RS12630 | | cytochrome bc complex cytochrome b subunit | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS26465 | | polynucleotide adenylyltransferase PcnB | 0.57 | QEN71_RS27780 | | cytochrome bc complex cytochrome b subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_04706 | | poly(A) polymerase | 0.58 | H281DRAFT_05670 | | ubiquinol-cytochrome c reductase cytochrome b subunit | — | — |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS03620 | | poly(A) polymerase | 0.58 | BPHYT_RS17625 | | cytochrome B | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_000870 | | poly(A) polymerase | 0.56 | ABIE53_003684 | | ubiquinol-cytochrome c reductase cytochrome b subunit | low | > 113 |
| Dechlorosoma suillum PS | 0.35 | Dsui_1515 | | poly(A) polymerase | 0.57 | Dsui_1813 | | cytochrome b subunit of the bc complex | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF3438 | | Poly(A) polymerase (EC 2.7.7.19) | 0.56 | GFF1294 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 90 |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS08710 | | polynucleotide adenylyltransferase PcnB | 0.52 | ABID97_RS22980 | | cytochrome bc complex cytochrome b subunit | low | > 91 |
Not shown: 31 genomes with orthologs for CSW01_03145 only; 19 genomes with orthologs for CSW01_03050 only