| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12875 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 1.0 | CSW01_03020 | | serine endoprotease DegQ | 0.45 | 16 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_03802 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.57 | OHPLBJKB_00470 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 74 |
| Escherichia coli BL21 | 0.71 | ECD_04101 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | ECD_03094 | | serine endoprotease, periplasmic | low | > 61 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_02445 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | MCAODC_08325 | degQ | serine endoprotease DegQ | low | > 88 |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_11940 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | OKFHMN_17805 | degQ | serine endoprotease DegQ | low | > 79 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_04200 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | NOLOHH_09605 | degQ | serine endoprotease DegQ | low | > 76 |
| Escherichia fergusonii Becca | 0.71 | EFB2_04300 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.57 | EFB2_00596 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 86 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_15580 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | JDDGAC_21430 | degQ | serine endoprotease DegQ | low | > 87 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_16215 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | KEDOAH_10345 | degQ | serine endoprotease DegQ | — | — |
| Escherichia coli ECRC62 | 0.71 | BNILDI_07315 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | BNILDI_01930 | degQ | serine endoprotease DegQ | low | > 75 |
| Escherichia coli ECOR38 | 0.71 | HEPCGN_10140 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | HEPCGN_16675 | degQ | serine endoprotease DegQ | low | > 88 |
| Escherichia coli BW25113 | 0.71 | b4233 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | 0.57 | b3234 | degQ | serine endoprotease, periplasmic (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_09790 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.57 | NIAGMN_15565 | degQ | serine endoprotease DegQ | low | > 80 |
| Klebsiella pneumoniae MKP103 | 0.71 | KDGMDA_11310 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.57 | KDGMDA_06190 | | serine endoprotease DegQ | low | > 95 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS24560 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | ECOLIN_RS18545 | | serine endoprotease DegQ | low | > 55 |
| Serratia liquefaciens MT49 | 0.70 | IAI46_01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.63 | IAI46_22390 | | serine endoprotease DegQ | low | > 86 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_00515 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.57 | MPMX20_04138 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 85 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS02820 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.58 | BWI76_RS25365 | | serine endoprotease DegQ | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF881 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.58 | GFF2974 | | Outer membrane stress sensor protease DegQ, serine protease | low | > 78 |
| Enterobacter asburiae PDN3 | 0.69 | EX28DRAFT_3420 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.57 | EX28DRAFT_3283 | | periplasmic serine protease, Do/DeqQ family | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.69 | PagCFBP13505_RS11350 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | PagCFBP13505_RS09425 | | serine endoprotease DegQ | low | > 74 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS18580 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.63 | DDA3937_RS01605 | | serine endoprotease DegQ | low | > 74 |
| Pantoea sp. MT58 | 0.69 | IAI47_02755 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.57 | IAI47_17260 | | serine endoprotease DegQ | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS02615 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.62 | HER17_RS19985 | | serine endoprotease DegQ | low | > 75 |
| Erwinia amylovora T8 | 0.69 | OLJFJH_02365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.52 | OLJFJH_00660 | | serine endoprotease DegP | low | > 58 |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS18515 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.63 | HGI48_RS01520 | | serine endoprotease DegQ | low | > 71 |
| Dickeya dianthicola ME23 | 0.68 | DZA65_RS19650 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.63 | DZA65_RS01585 | | serine endoprotease DegQ | low | > 75 |
| Erwinia tracheiphila HP pepo 2.2 | 0.67 | IJEDHG_06780 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.54 | IJEDHG_13665 | | serine endoprotease DegQ | — | — |
| Erwinia tracheiphila SCR3 | 0.67 | LU632_RS02135 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.54 | LU632_RS21355 | | Do family serine endopeptidase | low | > 74 |
| Shewanella amazonensis SB2B | 0.67 | Sama_0769 | | UDP-N-acetylmuramate (RefSeq) | 0.63 | Sama_3073 | | serine protease (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.67 | EX31_RS08665 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.56 | EX31_RS12475 | | Do family serine endopeptidase | low | > 89 |
| Shewanella loihica PV-4 | 0.65 | Shew_3144 | | UDP-N-acetylmuramate (RefSeq) | 0.60 | Shew_3296 | | protease Do (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_00168 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.59 | MIT1002_00842 | | Periplasmic pH-dependent serine endoprotease DegQ precursor | low | > 70 |
| Shewanella oneidensis MR-1 | 0.64 | SO3805 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) | 0.60 | SO3942 | | serine protease, HtrA/DegQ/DegS family (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_0791 | | UDP-N-acetylmuramate (RefSeq) | 0.60 | Shewana3_0690 | | peptidase Do (RefSeq) | low | > 73 |
| Pseudomonas sp. BP01 | 0.64 | JOY50_RS23075 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | JOY50_RS14680 | | DegQ family serine endoprotease | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.63 | GEMAOFIL_05114 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.28 | GEMAOFIL_01575 | | Periplasmic serine endoprotease DegP | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.63 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.29 | PFLU_RS07245 | | DegQ family serine endoprotease | low | > 109 |
| Pseudomonas putida KT2440 | 0.63 | PP_0547 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | PP_1430 | | putative periplasmic serine endoprotease DegP-like | low | > 96 |
| Pseudomonas simiae WCS417 | 0.63 | PS417_24800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | PS417_07135 | | serine peptidase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.63 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.29 | PFLU_RS07245 | | DegQ family serine endoprotease | low | > 109 |
| Pseudomonas segetis P6 | 0.63 | MPMX49_01032 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.28 | MPMX49_01404 | | Periplasmic serine endoprotease DegP | low | > 75 |
| Pseudomonas sp. SVBP6 | 0.63 | COO64_RS15685 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | COO64_RS16540 | | DegQ family serine endoprotease | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.62 | IKLFDK_20730 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.29 | IKLFDK_03285 | | serine protease MucD | low | > 100 |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_06550 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | AO353_17640 | | serine peptidase | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_0673 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.28 | Psest_3096 | | periplasmic serine protease, Do/DeqQ family | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.62 | Pf6N2E2_4982 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.28 | Pf6N2E2_2753 | | HtrA protease/chaperone protein | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_1344 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.28 | PfGW456L13_4513 | | HtrA protease/chaperone protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_15235 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | AO356_04560 | | serine peptidase | low | > 104 |
| Pseudomonas sp. S08-1 | 0.62 | OH686_09400 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.27 | OH686_20060 | | HtrA protease/chaperone protein | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2676 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.28 | Pf1N1B4_3326 | | HtrA protease/chaperone protein | — | — |
| Pseudomonas sp. DMC3 | 0.62 | GFF3860 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.28 | GFF2280 | | Periplasmic serine endoprotease DegP | low | > 89 |
| Methylophilus sp. DMC18 | 0.60 | GFF2071 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.30 | GFF1457 | | Periplasmic pH-dependent serine endoprotease DegQ | — | — |
| Kangiella aquimarina DSM 16071 | 0.58 | B158DRAFT_2035 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.26 | B158DRAFT_2183 | | periplasmic serine protease, Do/DeqQ family | low | > 40 |
| Marinobacter adhaerens HP15 | 0.57 | HP15_616 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.28 | HP15_779 | | serine protease MucD precursor | low | > 73 |
| Dechlorosoma suillum PS | 0.56 | Dsui_0384 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.29 | Dsui_1606 | | periplasmic serine protease, Do/DeqQ family | low | > 51 |
| Acinetobacter baumannii LAC-4 | 0.56 | RR41_RS18930 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.26 | RR41_RS05700 | | trypsin-like peptidase domain-containing protein | — | — |
| Acinetobacter radioresistens SK82 | 0.55 | MPMX26_03053 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.27 | MPMX26_02161 | | Periplasmic pH-dependent serine endoprotease DegQ | low | > 36 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS01965 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.28 | HSERO_RS21975 | | peptidase | low | > 78 |
| Rhodanobacter sp000427505 FW510-R12 | 0.55 | LRK53_RS01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.37 | LRK53_RS17720 | | Do family serine endopeptidase | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS17365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.41 | ABZR86_RS17545 | | DegQ family serine endoprotease | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_17020 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.40 | OKGIIK_00150 | | Periplasmic serine endoprotease DegP-like | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.54 | LRK54_RS06610 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.37 | LRK54_RS06430 | | Do family serine endopeptidase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.54 | LRK55_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.37 | LRK55_RS06175 | | Do family serine endopeptidase | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.1107.1 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) | 0.38 | Xcc-8004.4948.1 | | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | low | > 74 |
| Lysobacter sp. OAE881 | 0.46 | ABIE51_RS17450 | | Mur ligase family protein | 0.37 | ABIE51_RS03265 | | trypsin-like peptidase domain-containing protein | 0.68 | 16 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.16 | ABZR88_RS14425 | | UDP-N-acetylmuramate--L-alanine ligase | 0.23 | ABZR88_RS21675 | | Do family serine endopeptidase | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.14 | CA265_RS10785 | | peptidoglycan synthetase | 0.23 | CA265_RS23030 | | serine protease | low | > 88 |
Not shown: 20 genomes with orthologs for CSW01_12875 only; 22 genomes with orthologs for CSW01_03020 only