Conservation of cofitness between CSW01_03930 and CSW01_02880 in Vibrio cholerae E7946 ATCC 55056

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 1.0 CSW01_02880 regulatory protein RecX 0.45 12
Escherichia coli BL21 0.74 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.28 ECD_02548 regulatory protein for RecA low > 61
Escherichia fergusonii Becca 0.74 EFB2_01373 Dual-specificity RNA methyltransferase RlmN 0.28 EFB2_01226 Regulatory protein RecX low > 86
Escherichia coli ECOR38 0.74 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 HEPCGN_19905 recX recombination regulator RecX low > 88
Escherichia coli BW25113 0.74 b2517 yfgB predicted enzyme (NCBI) 0.28 b2698 recX RecA regulator RecX (NCBI) low > 76
Escherichia coli ECOR27 0.74 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 NOLOHH_12550 recX recombination regulator RecX low > 76
Escherichia coli Nissle 1917 0.74 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 ECOLIN_RS15055 recombination regulator RecX low > 55
Escherichia coli ECRC62 0.74 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 BNILDI_11110 recX recombination regulator RecX low > 75
Escherichia coli ECRC99 0.74 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 KEDOAH_07425 recX recombination regulator RecX — —
Escherichia coli ECRC100 0.74 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 OKFHMN_20710 recX recombination regulator RecX low > 79
Escherichia coli ECRC98 0.74 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 JDDGAC_24375 recX recombination regulator RecX low > 87
Escherichia coli ECRC102 0.74 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 NIAGMN_18480 recX recombination regulator RecX low > 80
Escherichia coli ECRC101 0.74 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 MCAODC_11235 recX recombination regulator RecX low > 87
Klebsiella michiganensis M5al 0.74 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.30 BWI76_RS22175 recombination regulator RecX — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.26 GFF4692 Regulatory protein RecX low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.28 OHPLBJKB_01036 Regulatory protein RecX low > 74
Klebsiella pneumoniae MKP103 0.74 KDGMDA_28215 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 KDGMDA_02845 recombination regulator RecX low > 95
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.30 EX28DRAFT_2784 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.30 MPMX20_03579 Regulatory protein RecX low > 85
Erwinia tracheiphila SCR3 0.74 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.26 LU632_RS15730 recombination regulator RecX low > 73
Dickeya dadantii 3937 0.73 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.24 DDA3937_RS16240 recombination regulator RecX low > 74
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS14930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.26 PagCFBP13505_RS16665 regulatory protein RecX low > 74
Erwinia amylovora T8 0.73 OLJFJH_10435 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.27 OLJFJH_09580 recombination regulator RecX low > 58
Dickeya dianthicola 67-19 0.73 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.25 HGI48_RS16350 recombination regulator RecX low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.25 DZA65_RS17445 recombination regulator RecX low > 75
Serratia liquefaciens MT49 0.73 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.31 IAI46_03845 recombination regulator RecX low > 87
Pectobacterium carotovorum WPP14 0.73 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.26 HER17_RS05050 recombination regulator RecX low > 75
Pantoea sp. MT58 0.73 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.26 IAI47_04305 regulatory protein RecX low > 76
Shewanella loihica PV-4 0.71 Shew_1287 hypothetical protein (RefSeq) 0.35 Shew_1216 regulatory protein RecX (RefSeq) low > 60
Shewanella amazonensis SB2B 0.69 Sama_2368 hypothetical protein (RefSeq) 0.32 Sama_1047 hypothetical protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.69 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN 0.28 MIT1002_01127 Regulatory protein RecX low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.32 Psyr_1379 Regulatory protein RecX — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase 0.30 B158DRAFT_1532 Uncharacterized protein conserved in bacteria low > 40
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.32 Psyr_1379 Regulatory protein RecX low > 86
Pseudomonas orientalis W4I3 0.55 QF045_RS25380 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.28 QF045_RS08735 recombination regulator RecX low > 93
Pseudomonas fluorescens SBW25 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.28 PFLU_RS05890 recombination regulator RecX — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.28 PFLU_RS05890 recombination regulator RecX low > 109
Pseudomonas simiae WCS417 0.55 PS417_23160 50S rRNA methyltransferase 0.28 PS417_05820 recombinase RecX low > 88
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_04784 Dual-specificity RNA methyltransferase RlmN 0.27 GEMAOFIL_01334 Regulatory protein RecX low > 96
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.29 AO353_16810 recombinase RecX low > 101
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.29 Pf6N2E2_2992 Regulatory protein RecX — —
Pseudomonas sp. SVBP6 0.55 COO64_RS03935 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.30 COO64_RS19935 recX recombination regulator RecX low > 93
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.31 AO356_05665 recombinase RecX — —
Pseudomonas sp. DMC3 0.54 GFF4342 Dual-specificity RNA methyltransferase RlmN 0.29 GFF2112 Regulatory protein RecX low > 89
Pseudomonas aeruginosa PA14 0.54 IKLFDK_19600 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.27 IKLFDK_18460 recombination regulator RecX — —
Pseudomonas aeruginosa PUPa3 0.54 DQ20_RS43210 rlmN;go_function=S-adenosylmethionine-dependent 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.27 DQ20_RS42230 recX;inference=COORDINATES recombination regulator RecX — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.26 PfGW456L13_4667 Regulatory protein RecX low > 87
Pseudomonas aeruginosa MRSN321 0.54 DY961_RS13890 rlmN;go_function=S-adenosylmethionine-dependent 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.27 DY961_RS14900 recX;inference=COORDINATES recombination regulator RecX low > 100
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.27 Pf1N1B4_3144 Regulatory protein RecX — —
Pseudomonas segetis P6 0.54 MPMX49_01515 Dual-specificity RNA methyltransferase RlmN 0.28 MPMX49_03329 Regulatory protein RecX low > 75
Pseudomonas sp. RS175 0.54 PFR28_00294 Dual-specificity RNA methyltransferase RlmN 0.29 PFR28_00473 Regulatory protein RecX low > 88
Pseudomonas stutzeri RCH2 0.54 Psest_1259 23S rRNA m2A2503 methyltransferase 0.30 Psest_2871 Uncharacterized protein conserved in bacteria — —
Pseudomonas putida KT2440 0.54 PP_0850 Dual-specificity RNA methyltransferase RlmN 0.30 PP_1630 Regulatory protein RecX low > 96
Pseudomonas sp. BP01 0.53 JOY50_RS22780 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.30 JOY50_RS23785 recX recombination regulator RecX low > 84
Pseudomonas sp. S08-1 0.53 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.33 OH686_18210 Regulatory protein RecX low > 80
Marinobacter adhaerens HP15 0.52 HP15_1490 conserved hypothetical protein 0.24 HP15_1237 regulatory protein RecX-like protein low > 73
Dechlorosoma suillum PS 0.51 Dsui_3145 23S rRNA m2A2503 methyltransferase 0.26 Dsui_0706 hypothetical protein — —
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 LRK54_RS14985 recombination regulator RecX low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 LRK55_RS14700 regulatory protein RecX low > 63
Acinetobacter radioresistens SK82 0.50 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN 0.25 MPMX26_01307 Regulatory protein RecX low > 36
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.17 ABZR86_RS00675 regulatory protein RecX low > 74
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS11195 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.20 LRK53_RS13635 recombination regulator RecX — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.20 OKGIIK_03745 recX recombination regulator RecX low > 53
Acinetobacter baumannii LAC-4 0.50 RR41_RS16460 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.28 RR41_RS08105 recombination regulator RecX — —
Methylophilus sp. DMC18 0.50 GFF1191 Dual-specificity RNA methyltransferase RlmN 0.26 GFF842 Regulatory protein RecX low > 43
Ralstonia solanacearum GMI1000 0.49 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 RS_RS02765 regulatory protein RecX low > 80
Ralstonia solanacearum PSI07 0.49 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.20 RPSI07_RS21255 recombination regulator RecX — —
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 ABZR87_RS07970 recombination regulator RecX low > 80
Ralstonia solanacearum UW163 0.49 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 UW163_RS01620 recombination regulator RecX — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 RALBFv3_RS12015 recombination regulator RecX — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.20 GFF2501 Regulatory protein RecX — —
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.23 Xcc-8004.3108.1 Regulatory protein RecX low > 74
Lysobacter sp. OAE881 0.48 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.23 ABIE51_RS07805 recombination regulator RecX — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.21 Ac3H11_1254 Regulatory protein RecX low > 79
Variovorax sp. OAS795 0.48 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 ABID97_RS02270 recombination regulator RecX low > 91
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS14810 50S rRNA methyltransferase 0.20 HSERO_RS03275 regulatory protein RecX — —
Variovorax sp. SCN45 0.47 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.20 GFF5391 Regulatory protein RecX — —

Not shown: 44 genomes with orthologs for CSW01_03930 only; 0 genomes with orthologs for CSW01_02880 only