Conservation of cofitness between CSW01_09655 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09655 SELO family protein 1.0 CSW01_01485 transcriptional regulator 0.81 19
Pseudomonas sp. RS175 0.45 PFR28_05043 Protein adenylyltransferase SelO 0.34 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Klebsiella michiganensis M5al 0.45 BWI76_RS17085 hypothetical protein 0.51 BWI76_RS26245 transcriptional regulator low > 92
Enterobacter sp. TBS_079 0.44 MPMX20_01907 Protein adenylyltransferase SelO 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Erwinia amylovora T8 0.44 OLJFJH_14650 YdiU family protein 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR low > 58
Serratia liquefaciens MT49 0.44 IAI46_11065 YdiU family protein 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR low > 86
Dickeya dadantii 3937 0.44 DDA3937_RS12935 YdiU family protein 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Pseudomonas putida KT2440 0.44 PP_5068 conserved protein of unknown function, UPF0061 family 0.31 PP_3415 Transcriptional regulator, LacI family low > 96
Klebsiella pneumoniae MKP103 0.44 KDGMDA_24305 protein adenylyltransferase SelO 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR low > 95
Dickeya dianthicola ME23 0.44 DZA65_RS13470 YdiU family protein 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Pseudomonas sp. BP01 0.44 JOY50_RS09370 selO protein adenylyltransferase SelO 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator low > 84
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF3534 Selenoprotein O and cysteine-containing homologs 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor low > 78
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1713 Uncharacterized conserved protein 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Escherichia coli BL21 0.44 ECD_01675 UPF0061 family protein 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Pectobacterium carotovorum WPP14 0.44 HER17_RS08850 YdiU family protein 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Escherichia coli BW25113 0.44 b1706 ydiU hypothetical protein (NCBI) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Dickeya dianthicola 67-19 0.44 HGI48_RS13010 YdiU family protein 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_12770 hypothetical protein 0.33 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas lactucae CFBP13502 0.43 GEMAOFIL_00665 Protein adenylyltransferase SelO 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR low > 93
Pantoea agglomerans CFBP13505 P0401 0.43 PagCFBP13505_RS17670 YdiU family protein 0.50 PagCFBP13505_RS18155 gluconate operon transcriptional repressor GntR low > 74
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Escherichia coli ECOR27 0.43 NOLOHH_17645 selO protein adenylyltransferase SelO 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 76
Escherichia coli ECOR38 0.43 HEPCGN_05490 selO protein adenylyltransferase SelO 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 88
Escherichia fergusonii Becca 0.43 EFB2_02285 Protein adenylyltransferase SelO 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli Nissle 1917 0.43 ECOLIN_RS09535 protein adenylyltransferase SelO 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Pseudomonas simiae WCS417 0.43 PS417_02140 hypothetical protein 0.33 PS417_21990 LacI family transcriptional regulator low > 88
Escherichia coli ECRC100 0.43 OKFHMN_27125 selO protein adenylyltransferase SelO 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 79
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_09050 hypothetical protein 0.34 AO356_05065 LacI family transcriptional regulator low > 104
Pantoea sp. MT58 0.43 IAI47_10920 YdiU family protein 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Escherichia coli ECRC101 0.43 MCAODC_18285 selO protein adenylyltransferase SelO 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 88
Escherichia coli ECRC99 0.43 KEDOAH_00985 selO protein adenylyltransferase SelO 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC98 0.43 JDDGAC_01700 selO protein adenylyltransferase SelO 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC102 0.43 NIAGMN_00940 selO protein adenylyltransferase SelO 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR low > 80
Pseudomonas segetis P6 0.43 MPMX49_04221 Protein adenylyltransferase SelO 0.33 MPMX49_02373 HTH-type transcriptional regulator GntR low > 75
Rahnella sp. WP5 0.43 EX31_RS13970 YdiU family protein 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas aeruginosa PA14 0.42 IKLFDK_28420 YdiU family protein 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR low > 100
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas fluorescens SBW25 0.42 PFLU_RS02195 YdiU family protein 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS02195 YdiU family protein 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS11220 hypothetical protein 0.34 HSERO_RS05460 LacI family transcription regulator low > 78
Pseudomonas sp. SVBP6 0.42 COO64_RS13240 selO protein adenylyltransferase SelO 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas stutzeri RCH2 0.42 Psest_0396 Uncharacterized conserved protein 0.34 Psest_2126 Transcriptional regulators low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0494 Protein of unknown function UPF0061 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0494 Protein of unknown function UPF0061 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas sp. DMC3 0.41 GFF3135 Protein adenylyltransferase SelO 0.33 GFF5268 HTH-type transcriptional regulator GntR low > 89
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_25400 YdiU family protein 0.54 IJEDHG_08040 gntR gluconate operon transcriptional repressor GntR low > 61
Erwinia tracheiphila SCR3 0.41 LU632_RS10980 YdiU family protein 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR low > 74
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs 0.29 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor low > 79
Ralstonia solanacearum UW163 0.41 UW163_RS14490 YdiU family protein 0.24 UW163_RS16860 GntR family transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS01180 YdiU family protein 0.24 RALBFv3_RS16125 GntR family transcriptional regulator low > 76
Ralstonia solanacearum GMI1000 0.40 RS_RS08830 YdiU family protein 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.40 RPSI07_RS16295 YdiU family protein 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator low > 81
Variovorax sp. OAS795 0.40 ABID97_RS15700 protein adenylyltransferase SelO 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator low > 91
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS12630 protein adenylyltransferase SelO 0.26 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator low > 80
Variovorax sp. SCN45 0.39 GFF1330 UPF0061 protein YdiU 0.30 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor low > 127
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS09550 hypothetical protein 0.32 BPHYT_RS00410 LacI family transcription regulator low > 109
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_00914 Uncharacterized conserved protein YdiU, UPF0061 family 0.30 H281DRAFT_05920 transcriptional regulator, LacI family low > 103
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS21900 YdiU family protein 0.29 QEN71_RS13585 LacI family DNA-binding transcriptional regulator low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4580 Selenoprotein O and cysteine-containing homologs 0.30 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor low > 90
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS11160 hypothetical protein 0.26 RR42_RS22645 GntR family transcriptional regulator low > 128
Rhizobium sp. OAE497 0.33 ABIE40_RS04755 protein adenylyltransferase SelO 0.25 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator low > 107
Xanthobacter sp. DMC5 0.33 GFF2077 Protein adenylyltransferase SelO 0.31 GFF1533 HTH-type transcriptional regulator GntR — —
Castellaniella sp019104865 MT123 0.32 ABCV34_RS04315 YdiU family protein 0.26 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator low > 48
Agrobacterium fabrum C58 0.32 Atu0945 hypothetical protein 0.28 Atu4685 LacI family transcriptional regulator low > 89
Sinorhizobium meliloti 1021 0.31 SMc00453 hypothetical protein 0.29 SM_b20667 LacI family transcriptional regulator low > 103
Dinoroseobacter shibae DFL-12 0.29 Dshi_1157 protein of unknown function UPF0061 (RefSeq) 0.27 Dshi_3322 transcriptional regulator, LacI family (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.28 PGA1_c11360 Uncharacterized conserved protein 0.28 PGA1_c33870 putative HTH-type transcriptional regulator GntR low > 62
Alteromonas macleodii MIT1002 0.15 MIT1002_03272 hypothetical protein 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor low > 70

Not shown: 22 genomes with orthologs for CSW01_09655 only; 4 genomes with orthologs for CSW01_01485 only