Conservation of cofitness between CSW01_09600 and CSW01_01280 in Vibrio cholerae E7946 ATCC 55056

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09600 DNA-binding protein HU-beta 1.0 CSW01_01280 GDP-mannose 4,6-dehydratase 0.77 11
Enterobacter sp. TBS_079 0.76 MPMX20_01031 DNA-binding protein HU-beta 0.82 MPMX20_03035 GDP-mannose 4,6-dehydratase low > 85
Enterobacter asburiae PDN3 0.76 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein 0.83 EX28DRAFT_0502 GDP-mannose 4,6-dehydratase low > 76
Escherichia coli BW25113 0.75 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) 0.83 b2053 gmd GDP-D-mannose dehydratase, NAD(P)-binding (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF4356 DNA-binding protein HU-beta 0.83 GFF3875 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03233 DNA-binding protein HU-beta 0.10 OHPLBJKB_04266 dTDP-glucose 4,6-dehydratase 2 low > 74
Pantoea sp. MT58 0.75 IAI47_14640 DNA-binding protein HU-beta 0.11 IAI47_18500 dTDP-glucose 4,6-dehydratase — —
Pantoea agglomerans CFBP13505 P0401 0.75 PagCFBP13505_RS10555 DNA-binding protein HU-beta 0.46 PagCFBP13505_RS01140 GDP-mannose 4,6-dehydratase low > 74
Escherichia coli BL21 0.75 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.83 ECD_01959 GDP-D-mannose dehydratase, NAD(P)-binding low > 61
Rahnella sp. WP5 0.75 EX31_RS22260 DNA-binding protein HU-beta 0.52 EX31_RS02865 GDP-mannose 4,6-dehydratase low > 89
Escherichia fergusonii Becca 0.75 EFB2_03617 DNA-binding protein HU-beta 0.83 EFB2_01801 GDP-mannose 4,6-dehydratase low > 86
Escherichia coli Nissle 1917 0.74 ECOLIN_RS02640 nucleoid-associated protein HU-beta 0.82 ECOLIN_RS12095 GDP-mannose 4,6-dehydratase low > 55
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS20745 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.39 DY961_RS25555 gmd;go_function=GDP-mannose GDP-mannose 4 6-dehydratase — —
Dickeya dianthicola 67-19 0.74 HGI48_RS05700 DNA-binding protein HU-beta 0.87 HGI48_RS18595 GDP-mannose 4,6-dehydratase low > 71
Escherichia coli ECOR27 0.74 NOLOHH_01250 hupB DNA-binding protein HU-beta 0.83 NOLOHH_15675 GDP-mannose 4,6-dehydratase low > 76
Pseudomonas sp. S08-1 0.74 OH686_03630 DNA-binding protein HU-beta 0.40 OH686_11980 GDP-mannose 4,6-dehydratase — —
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS54825 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.39 DQ20_RS58005 gmd;go_function=GDP-mannose GDP-mannose 4 6-dehydratase — —
Escherichia coli ECRC100 0.74 OKFHMN_08315 hupB DNA-binding protein HU-beta 0.83 OKFHMN_24440 GDP-mannose 4,6-dehydratase — —
Dickeya dadantii 3937 0.74 DDA3937_RS05655 DNA-binding protein HU-beta 0.87 DDA3937_RS18665 GDP-mannose 4,6-dehydratase low > 74
Escherichia coli ECRC101 0.74 MCAODC_27540 hupB DNA-binding protein HU-beta 0.83 MCAODC_20500 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC99 0.74 KEDOAH_19650 hupB DNA-binding protein HU-beta 0.83 KEDOAH_03710 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC102 0.74 NIAGMN_06370 hupB DNA-binding protein HU-beta 0.83 NIAGMN_22385 GDP-mannose 4,6-dehydratase low > 80
Pseudomonas aeruginosa PA14 0.74 IKLFDK_08765 DNA-binding protein HU-beta 0.39 IKLFDK_26150 GDP-mannose 4 6-dehydratase — —
Dickeya dianthicola ME23 0.74 DZA65_RS06025 DNA-binding protein HU-beta 0.87 DZA65_RS19730 GDP-mannose 4,6-dehydratase low > 75
Escherichia coli ECOR38 0.74 HEPCGN_06930 hupB DNA-binding protein HU-beta 0.83 HEPCGN_03045 GDP-mannose 4,6-dehydratase low > 88
Escherichia coli ECRC98 0.74 JDDGAC_11970 hupB DNA-binding protein HU-beta 0.83 JDDGAC_28550 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC62 0.74 BNILDI_22665 hupB DNA-binding protein HU-beta 0.83 BNILDI_14585 GDP-mannose 4,6-dehydratase low > 75
Erwinia amylovora T8 0.73 OLJFJH_17955 DNA-binding protein HU-beta 0.10 OLJFJH_12090 dTDP-glucose 4 6-dehydratase — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS15835 DNA-binding protein HU-beta 0.78 HER17_RS14540 GDP-mannose 4,6-dehydratase low > 75
Pseudomonas stutzeri RCH2 0.73 Psest_2284 Bacterial nucleoid DNA-binding protein 0.83 Psest_1818 GDP-mannose 4,6-dehydratase — —
Pseudomonas putida KT2440 0.72 PP_2303 DNA binding regulator, beta subunit B 0.46 PP_1799 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS19155 HU family DNA-binding protein 0.77 PFLU_RS17890 GDP-mannose 4,6-dehydratase — —
Pseudomonas sp. SVBP6 0.69 COO64_RS19210 HU family DNA-binding protein 0.45 COO64_RS06615 gmd GDP-mannose 4,6-dehydratase low > 93
Pseudomonas fluorescens SBW25 0.69 PFLU_RS19155 HU family DNA-binding protein 0.77 PFLU_RS17890 GDP-mannose 4,6-dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.45 Psyr_0916 GDP-mannose 4,6-dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.45 Psyr_0916 GDP-mannose 4,6-dehydratase — —
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS09465 transcriptional regulator 0.69 BPHYT_RS04000 GDP-mannose 4,6-dehydratase low > 109
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS21970 HU family DNA-binding protein 0.70 QEN71_RS26360 GDP-mannose 4,6-dehydratase low > 153
Pseudomonas sp. DMC3 0.68 GFF1446 DNA-binding protein HU-beta 0.40 GFF545 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_20190 DNA-binding protein HU 0.42 AO353_10245 GDP-mannose 4,6-dehydratase — —
Paraburkholderia graminis OAS925 0.67 ABIE53_002118 DNA-binding protein HU-beta 0.68 ABIE53_000940 GDPmannose 4,6-dehydratase low > 113
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_3948 DNA-binding protein HU-beta 0.39 Pf1N1B4_1965 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) — —
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_01735 DNA-binding protein HU 0.40 AO356_11835 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2215 DNA-binding protein HU-beta 0.40 Pf6N2E2_4242 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) — —
Dechlorosoma suillum PS 0.67 Dsui_2199 bacterial nucleoid DNA-binding protein 0.71 Dsui_0085 GDP-mannose 4,6-dehydratase low > 51
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00899 bacterial nucleoid protein Hbs 0.69 H281DRAFT_04776 GDPmannose 4,6-dehydratase — —
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_2555 DNA-binding protein HU-beta 0.40 PfGW456L13_2338 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) — —
Castellaniella sp019104865 MT123 0.67 ABCV34_RS06640 HU family DNA-binding protein 0.71 ABCV34_RS12935 GDP-mannose 4,6-dehydratase — —
Variovorax sp. OAS795 0.67 ABID97_RS10665 HU family DNA-binding protein 0.44 ABID97_RS05705 GDP-mannose 4,6-dehydratase — —
Rhodanobacter denitrificans MT42 0.66 LRK55_RS16465 HU family DNA-binding protein 0.68 LRK55_RS03650 GDP-mannose 4,6-dehydratase — —
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_08025 himA integration host factor subunit alpha 0.44 OKGIIK_01210 gmd GDP-mannose 4,6-dehydratase — —
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS16740 HU family DNA-binding protein 0.15 LRK54_RS05640 GDP-mannose 4,6-dehydratase low > 59
Variovorax sp. SCN45 0.66 GFF2853 DNA-binding protein HU-beta 0.74 GFF61 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF3853 DNA-binding protein HU-beta 0.78 GFF2554 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 90
Ralstonia solanacearum PSI07 0.59 RPSI07_RS16140 HU family DNA-binding protein 0.47 RPSI07_RS19840 GDP-mannose 4,6-dehydratase — —
Magnetospirillum magneticum AMB-1 0.55 AMB_RS14030 HU family DNA-binding protein 0.63 AMB_RS05505 GDP-mannose 4,6-dehydratase — —
Azospirillum sp. SherDot2 0.54 MPMX19_01544 DNA-binding protein HU 0.63 MPMX19_06644 GDP-mannose 4,6-dehydratase — —
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1795 hup-3 DNA-binding protein HU (TIGR) 0.69 DVU0448 gmd GDP-mannose 4,6-dehydratase (TIGR) — —
Bacteroides thetaiotaomicron VPI-5482 0.53 BT2830 DNA-binding protein HU-beta (NCBI ptt file) 0.60 BT1224 GDP-mannose 4,6-dehydratase (NCBI ptt file) — —
Rhodospirillum rubrum S1H 0.53 Rru_A1553 Histone-like DNA-binding protein (NCBI) 0.63 Rru_A0253 GDP-mannose 4,6-dehydratase (NCBI) — —
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_0500 histone family protein DNA-binding protein (RefSeq) 0.67 DvMF_2694 GDP-mannose 4,6-dehydratase (RefSeq) low > 51
Azospirillum brasilense Sp245 0.52 AZOBR_RS33080 transcriptional regulator 0.44 AZOBR_RS33465 GDP-mannose 4 6-dehydratase — —
Bacteroides ovatus ATCC 8483 0.51 BACOVA_02078 DNA-binding protein HU 0.60 BACOVA_00511 GDP-mannose 4,6-dehydratase low > 96
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS01105 HU family DNA-binding protein 0.60 HMPREF1181_RS12530 GDP-mannose 4,6-dehydratase low > 56
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS10500 HU family DNA-binding protein 0.61 HMPREF1058_RS06615 GDP-mannose 4,6-dehydratase low > 67
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_02036 DNA-binding protein HU 0.63 CCNA_00472 GDP-mannose 4,6 dehydratase low > 67
Caulobacter crescentus NA1000 0.46 CCNA_02036 DNA-binding protein HU 0.63 CCNA_00472 GDP-mannose 4,6 dehydratase low > 66
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS20435 HU family DNA-binding protein 0.67 ABZR88_RS18375 GDP-mannose 4,6-dehydratase — —
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS22675 integration host factor subunit beta 0.70 CA265_RS19210 GDP-mannose 4,6-dehydratase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_14990 integration host factor subunit beta 0.66 CA264_05200 GDP-mannose 4,6-dehydratase — —

Not shown: 28 genomes with orthologs for CSW01_09600 only; 20 genomes with orthologs for CSW01_01280 only