Conservation of cofitness between CSW01_09600 and CSW01_01245 in Vibrio cholerae E7946 ATCC 55056

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09600 DNA-binding protein HU-beta 1.0 CSW01_01245 lipopolysaccharide heptosyltransferase II 0.77 19
Erwinia tracheiphila SCR3 0.78 LU632_RS18330 hupB DNA-binding protein HU-beta 0.48 LU632_RS21920 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_16455 hupB DNA-binding protein HU-beta 0.48 IJEDHG_07865 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Enterobacter asburiae PDN3 0.76 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein 0.50 EX28DRAFT_3872 lipopolysaccharide heptosyltransferase II — —
Klebsiella michiganensis M5al 0.76 BWI76_RS06540 DNA-binding protein HU-beta 0.49 BWI76_RS27265 ADP-heptose--LPS heptosyltransferase II — —
Enterobacter sp. TBS_079 0.76 MPMX20_01031 DNA-binding protein HU-beta 0.49 MPMX20_00113 ADP-heptose--LPS heptosyltransferase 2 — —
Klebsiella pneumoniae MKP103 0.76 KDGMDA_14625 DNA-binding protein HU-beta 0.45 KDGMDA_07950 ADP-heptose--LPS heptosyltransferase RfaF low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF4356 DNA-binding protein HU-beta 0.50 GFF391 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) low > 78
Escherichia coli BL21 0.75 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.50 ECD_03477 ADP-heptose:LPS heptosyltransferase II — —
Pantoea sp. MT58 0.75 IAI47_14640 DNA-binding protein HU-beta 0.48 IAI47_00685 ADP-heptose--LPS heptosyltransferase RfaF — —
Rahnella sp. WP5 0.75 EX31_RS22260 DNA-binding protein HU-beta 0.50 EX31_RS14400 ADP-heptose--LPS heptosyltransferase RfaF low > 89
Pantoea agglomerans CFBP13505 P0401 0.75 PagCFBP13505_RS10555 DNA-binding protein HU-beta 0.48 PagCFBP13505_RS18660 ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03233 DNA-binding protein HU-beta 0.50 OHPLBJKB_00080 ADP-heptose--LPS heptosyltransferase 2 — —
Serratia liquefaciens MT49 0.75 IAI46_05025 DNA-binding protein HU-beta 0.49 IAI46_24740 ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli BW25113 0.75 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) 0.50 b3620 rfaF ADP-heptose:LPS heptosyltransferase II (NCBI) low > 76
Escherichia fergusonii Becca 0.75 EFB2_03617 DNA-binding protein HU-beta 0.50 EFB2_00191 ADP-heptose--LPS heptosyltransferase 2 — —
Escherichia coli Nissle 1917 0.74 ECOLIN_RS02640 nucleoid-associated protein HU-beta 0.50 ECOLIN_RS20650 ADP-heptose--LPS heptosyltransferase RfaF low > 55
Escherichia coli ECRC102 0.74 NIAGMN_06370 hupB DNA-binding protein HU-beta 0.50 NIAGMN_13455 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 80
Pseudomonas aeruginosa PA14 0.74 IKLFDK_08765 DNA-binding protein HU-beta 0.51 IKLFDK_28475 heptosyltransferase I — —
Escherichia coli ECRC100 0.74 OKFHMN_08315 hupB DNA-binding protein HU-beta 0.50 OKFHMN_15695 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 79
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS54825 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.51 DQ20_RS51195 waaF;go_function=lipopolysaccharide lipopolysaccharide heptosyltransferase II — —
Dickeya dadantii 3937 0.74 DDA3937_RS05655 DNA-binding protein HU-beta 0.50 DDA3937_RS20445 ADP-heptose--LPS heptosyltransferase RfaF — —
Dickeya dianthicola ME23 0.74 DZA65_RS06025 DNA-binding protein HU-beta 0.49 DZA65_RS00820 ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli ECOR38 0.74 HEPCGN_06930 hupB DNA-binding protein HU-beta 0.50 HEPCGN_14540 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 88
Escherichia coli ECOR27 0.74 NOLOHH_01250 hupB DNA-binding protein HU-beta 0.50 NOLOHH_07575 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 76
Escherichia coli ECRC98 0.74 JDDGAC_11970 hupB DNA-binding protein HU-beta 0.50 JDDGAC_19320 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 87
Escherichia coli ECRC62 0.74 BNILDI_22665 hupB DNA-binding protein HU-beta 0.50 BNILDI_03935 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli ECRC101 0.74 MCAODC_27540 hupB DNA-binding protein HU-beta 0.50 MCAODC_06205 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Pseudomonas sp. S08-1 0.74 OH686_03630 DNA-binding protein HU-beta 0.53 OH686_09690 lipopolysaccharide heptosyltransferase II — —
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS20745 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.51 DY961_RS10865 waaF;go_function=lipopolysaccharide lipopolysaccharide heptosyltransferase II — —
Dickeya dianthicola 67-19 0.74 HGI48_RS05700 DNA-binding protein HU-beta 0.49 HGI48_RS00765 ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli ECRC99 0.74 KEDOAH_19650 hupB DNA-binding protein HU-beta 0.50 KEDOAH_12455 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS15835 DNA-binding protein HU-beta 0.51 HER17_RS20775 ADP-heptose--LPS heptosyltransferase RfaF low > 75
Erwinia amylovora T8 0.73 OLJFJH_17955 DNA-binding protein HU-beta 0.49 OLJFJH_05880 ADP-heptose--LPS heptosyltransferase RfaF — —
Pseudomonas stutzeri RCH2 0.73 Psest_2284 Bacterial nucleoid DNA-binding protein 0.53 Psest_0451 lipopolysaccharide heptosyltransferase II — —
Pseudomonas putida KT2440 0.72 PP_2303 DNA binding regulator, beta subunit B 0.55 PP_0341 ADP-heptose:LPS heptosyltransferase II — —
Pseudomonas sp. BP01 0.71 JOY50_RS25900 HU family DNA-binding protein 0.54 JOY50_RS17820 waaF lipopolysaccharide heptosyltransferase II — —
Pseudomonas orientalis W4I3 0.69 QF045_RS18885 HU family DNA-binding protein 0.53 QF045_RS05290 lipopolysaccharide heptosyltransferase II — —
Pseudomonas sp. SVBP6 0.69 COO64_RS19210 HU family DNA-binding protein 0.54 COO64_RS22830 waaF lipopolysaccharide heptosyltransferase II — —
Pseudomonas simiae WCS417 0.69 PS417_17220 transcriptional regulator HU subunit alpha 0.53 PS417_02230 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS19155 HU family DNA-binding protein 0.53 PFLU_RS02285 lipopolysaccharide heptosyltransferase II — —
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS19155 HU family DNA-binding protein 0.53 PFLU_RS02285 lipopolysaccharide heptosyltransferase II — —
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.54 Psyr_0520 Glycosyl transferase, family 9 — —
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS09465 transcriptional regulator 0.38 BPHYT_RS16295 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.54 Psyr_0520 Glycosyl transferase, family 9 — —
Pseudomonas sp. DMC3 0.68 GFF1446 DNA-binding protein HU-beta 0.53 GFF3156 ADP-heptose--LPS heptosyltransferase 2 — —
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS21970 HU family DNA-binding protein 0.38 QEN71_RS02400 lipopolysaccharide heptosyltransferase II — —
Dechlorosoma suillum PS 0.67 Dsui_2199 bacterial nucleoid DNA-binding protein 0.39 Dsui_3341 lipopolysaccharide heptosyltransferase II — —
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_01735 DNA-binding protein HU 0.53 AO356_08950 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_20190 DNA-binding protein HU 0.53 AO353_12875 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2215 DNA-binding protein HU-beta 0.54 Pf6N2E2_3671 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) — —
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_2555 DNA-binding protein HU-beta 0.53 PfGW456L13_212 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) — —
Paraburkholderia graminis OAS925 0.67 ABIE53_002118 DNA-binding protein HU-beta 0.37 ABIE53_003434 heptosyltransferase-2 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00899 bacterial nucleoid protein Hbs 0.37 H281DRAFT_04195 heptosyltransferase-2 — —
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_3948 DNA-binding protein HU-beta 0.53 Pf1N1B4_1473 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) — —
Ralstonia solanacearum UW163 0.59 UW163_RS14645 HU family DNA-binding protein 0.38 UW163_RS01465 lipopolysaccharide heptosyltransferase II — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS16140 HU family DNA-binding protein 0.37 RPSI07_RS21185 lipopolysaccharide heptosyltransferase II — —
Ralstonia solanacearum GMI1000 0.59 RS_RS08660 HU family DNA-binding protein 0.38 RS_RS02830 lipopolysaccharide heptosyltransferase II — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS01335 HU family DNA-binding protein 0.38 RALBFv3_RS12145 lipopolysaccharide heptosyltransferase II — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS12780 HU family DNA-binding protein 0.39 ABZR87_RS08040 lipopolysaccharide heptosyltransferase II low > 80
Magnetospirillum magneticum AMB-1 0.55 AMB_RS14030 HU family DNA-binding protein 0.12 AMB_RS02720 glycosyltransferase family 9 protein — —
Azospirillum sp. SherDot2 0.54 MPMX19_01544 DNA-binding protein HU 0.09 MPMX19_04967 ADP-heptose--LPS heptosyltransferase 2 — —
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1795 hup-3 DNA-binding protein HU (TIGR) 0.11 DVU1055 heptosyltransferase family protein (TIGR) — —
Bacteroides thetaiotaomicron VPI-5482 0.53 BT2830 DNA-binding protein HU-beta (NCBI ptt file) 0.10 BT3362 heptosyltransferase (NCBI ptt file) — —
Rhodospirillum rubrum S1H 0.53 Rru_A1553 Histone-like DNA-binding protein (NCBI) 0.10 Rru_A2230 Glycosyl transferase, family 9 (NCBI) — —
Azospirillum brasilense Sp245 0.52 AZOBR_RS33080 transcriptional regulator 0.08 AZOBR_RS06275 heptosyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_0500 histone family protein DNA-binding protein (RefSeq) 0.11 DvMF_3136 lipopolysaccharide heptosyltransferase II (RefSeq) — —
Methylophilus sp. DMC18 0.48 GFF1306 DNA-binding protein HU-beta 0.49 GFF294 ADP-heptose--LPS heptosyltransferase 2 — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS20435 HU family DNA-binding protein 0.10 ABZR88_RS13940 glycosyltransferase family 9 protein — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_14990 integration host factor subunit beta 0.13 CA264_20400 heptosyltransferase — —

Not shown: 28 genomes with orthologs for CSW01_09600 only; 8 genomes with orthologs for CSW01_01245 only