Conservation of cofitness between CSW01_01470 and CSW01_00140 in Vibrio cholerae E7946 ATCC 55056

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01470 permease 1.0 CSW01_00140 dihydroxy-acid dehydratase 0.39 9
Pectobacterium carotovorum WPP14 0.64 HER17_RS01460 GntP family permease 0.85 HER17_RS01075 dihydroxy-acid dehydratase low > 75
Cellulophaga baltica 18 0.31 M666_RS17620 gluconate:H+ symporter 0.30 M666_RS14910 dihydroxy-acid dehydratase low > 67
Erwinia amylovora T8 0.31 OLJFJH_04270 gluconate transporter 0.84 OLJFJH_06230 dihydroxy-acid dehydratase low > 58
Alteromonas macleodii MIT1002 0.30 MIT1002_03473 5-keto-D-gluconate transporter 0.78 MIT1002_04041 Dihydroxy-acid dehydratase low > 70
Escherichia coli ECOR27 0.30 NOLOHH_12335 ygbN GntP family transporter 0.85 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 76
Pseudomonas sp. DMC3 0.30 GFF4936 High-affinity gluconate transporter 0.76 GFF246 Dihydroxy-acid dehydratase low > 89
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS08740 permease 0.73 HSERO_RS02650 dihydroxy-acid dehydratase low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00993 Inner membrane permease YgbN 0.84 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 74
Escherichia coli BW25113 0.30 b2740 ygbN predicted transporter (NCBI) 0.85 b3771 ilvD dihydroxy-acid dehydratase (NCBI) low > 76
Escherichia coli BL21 0.30 ECD_02590 putative transporter 0.84 ECD_03649 dihydroxyacid dehydratase low > 61
Pantoea sp. MT58 0.30 IAI47_01660 gluconate transporter 0.83 IAI47_01035 dihydroxy-acid dehydratase low > 76
Escherichia fergusonii Becca 0.30 EFB2_01172 Inner membrane permease YgbN 0.85 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0417 gluconate permease GntT 0.76 Psyr_0469 dihydroxyacid dehydratase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0417 gluconate permease GntT 0.76 Psyr_0469 dihydroxyacid dehydratase low > 86
Escherichia coli ECRC62 0.29 BNILDI_10885 ygbN GntP family transporter 0.85 BNILDI_04750 ilvD dihydroxy-acid dehydratase low > 75
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS26910 GntP family permease 0.73 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Rahnella sp. WP5 0.29 EX31_RS16635 gluconate transporter 0.80 EX31_RS15005 dihydroxy-acid dehydratase low > 89
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Serratia liquefaciens MT49 0.29 IAI46_23170 gluconate transporter 0.82 IAI46_24345 dihydroxy-acid dehydratase low > 87
Pantoea agglomerans CFBP13505 P0401 0.29 PagCFBP13505_RS18165 gluconate transporter 0.84 PagCFBP13505_RS20930 dihydroxy-acid dehydratase low > 74
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3740 Gluconate permease 0.73 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 79
Erwinia tracheiphila SCR3 0.29 LU632_RS19170 gntU gluconate transporter 0.82 LU632_RS24400 ilvD dihydroxy-acid dehydratase low > 73
Erwinia tracheiphila HP pepo 2.2 0.29 IJEDHG_08030 gntU gluconate transporter 0.82 IJEDHG_09115 ilvD dihydroxy-acid dehydratase low > 61
Pseudomonas lactucae CFBP13502 0.29 GEMAOFIL_02491 Inner membrane permease YgbN 0.76 GEMAOFIL_05518 Dihydroxy-acid dehydratase low > 96
Acinetobacter baumannii LAC-4 0.28 RR41_RS16520 gluconate:H+ symporter 0.71 RR41_RS00130 dihydroxy-acid dehydratase low > 55
Dickeya dianthicola 67-19 0.28 HGI48_RS19890 gluconate transporter 0.83 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Dickeya dianthicola ME23 0.28 DZA65_RS20960 gluconate transporter 0.83 DZA65_RS21335 dihydroxy-acid dehydratase low > 75
Ralstonia solanacearum GMI1000 0.28 RS_RS22870 permease 0.29 RS_RS12105 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.28 RPSI07_RS05470 permease 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_1667 gluconate permease GntT (TC 2.A.8.1.4) 0.29 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase low > 68
Enterobacter asburiae PDN3 0.28 EX28DRAFT_4127 gluconate transporter 0.84 EX28DRAFT_4443 dihydroxy-acid dehydratase low > 76
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS19095 gluconate:H+ symporter 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS18165 permease 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.28 UW163_RS20965 permease 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Dickeya dadantii 3937 0.28 DDA3937_RS19775 gluconate transporter 0.84 DDA3937_RS20155 dihydroxy-acid dehydratase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF572 Low-affinity gluconate/H+ symporter GntU 0.84 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_07790 permease DsdX 0.76 AO356_13250 dihydroxy-acid dehydratase low > 104
Enterobacter sp. TBS_079 0.27 MPMX20_04302 High-affinity gluconate transporter 0.84 MPMX20_04499 Dihydroxy-acid dehydratase low > 85
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_05900 permease DsdX 0.76 AO353_08345 dihydroxy-acid dehydratase low > 101
Pseudomonas orientalis W4I3 0.27 QF045_RS25865 gluconate:H+ symporter 0.76 QF045_RS01290 dihydroxy-acid dehydratase low > 93
Klebsiella michiganensis M5al 0.27 BWI76_RS26235 gluconate transporter 0.85 BWI76_RS00975 dihydroxy-acid dehydratase low > 92
Pseudomonas sp. SVBP6 0.27 COO64_RS25580 GntP family permease 0.76 COO64_RS12815 ilvD dihydroxy-acid dehydratase 0.63 93
Paraburkholderia graminis OAS925 0.27 ABIE53_003515 GntP family gluconate:H+ symporter 0.74 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Pseudomonas aeruginosa MRSN321 0.27 DY961_RS18000 GntP family permease 0.77 DY961_RS21735 ilvD;go_function=dihydroxy-acid dihydroxy-acid dehydratase low > 100
Pseudomonas aeruginosa PUPa3 0.27 DQ20_RS59240 GntP family permease 0.77 DQ20_RS37560 ilvD;go_function=dihydroxy-acid dihydroxy-acid dehydratase low > 101
Pseudomonas aeruginosa PA14 0.27 IKLFDK_11385 Gluconate permease 0.77 IKLFDK_23670 dihydroxy-acid dehydratase 0.27 91
Pseudomonas simiae WCS417 0.27 PS417_23605 permease DsdX 0.77 PS417_26890 dihydroxy-acid dehydratase low > 88
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS13375 permease 0.70 BPHYT_RS10100 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_3441 Gluconate transporter family protein 0.76 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 103
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_5135 Gluconate transporter family protein 0.76 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Escherichia coli ECRC100 0.27 OKFHMN_16845 gntU gluconate transporter 0.85 OKFHMN_14640 ilvD dihydroxy-acid dehydratase low > 79
Pseudomonas sp. RS175 0.27 PFR28_00028 High-affinity gluconate transporter 0.76 PFR28_04278 Dihydroxy-acid dehydratase low > 88
Escherichia coli ECRC98 0.27 JDDGAC_20475 gntU gluconate transporter 0.85 JDDGAC_18260 ilvD dihydroxy-acid dehydratase low > 87
Pseudomonas fluorescens SBW25 0.27 PFLU_RS25420 2-keto-3-deoxygluconate permease 0.76 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Escherichia coli ECOR38 0.27 HEPCGN_15670 gntU gluconate transporter 0.84 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 88
Klebsiella pneumoniae MKP103 0.27 KDGMDA_07030 gluconate transporter 0.85 KDGMDA_09490 dihydroxy-acid dehydratase low > 95
Escherichia coli ECRC102 0.27 NIAGMN_14615 gntU gluconate transporter 0.85 NIAGMN_12395 ilvD dihydroxy-acid dehydratase low > 80
Escherichia coli ECRC101 0.27 MCAODC_07375 gntU gluconate transporter 0.85 MCAODC_05145 ilvD dihydroxy-acid dehydratase low > 87
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS25420 2-keto-3-deoxygluconate permease 0.76 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Escherichia coli ECRC99 0.27 KEDOAH_11295 gntU gluconate transporter 0.85 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli Nissle 1917 0.27 ECOLIN_RS19505 gluconate transporter 0.85 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 55
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_04276 gluconate permease GntT 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Pseudomonas putida KT2440 0.26 PP_3417 D-gluconate transporter 0.77 PP_5128 Dihydroxy-acid dehydratase low > 96
Pseudomonas sp. BP01 0.26 JOY50_RS23615 GntP family permease 0.77 JOY50_RS20745 ilvD dihydroxy-acid dehydratase — —
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS12640 gluconate:H+ symporter 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase low > 74
Variovorax sp. SCN45 0.25 GFF1885 Gluconate transporter family protein 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_556 Gluconate permease 0.76 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_2089 gluconate transporter 0.27 Echvi_2055 dihydroxy-acid dehydratase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS01125 gluconate permease 0.26 CA265_RS15795 dihydroxy-acid dehydratase low > 88
Sphingobium sp. HT1-2 0.21 GFF1926 Gluconate transporter family protein 0.73 GFF1424 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 95
Rhodospirillum rubrum S1H 0.20 Rru_A3140 Gluconate transporter (NCBI) 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) low > 58

Not shown: 0 genomes with orthologs for CSW01_01470 only; 50 genomes with orthologs for CSW01_00140 only