Conservation of cofitness between CA265_RS10765 and CA265_RS15580 in Pedobacter sp. GW460-11-11-14-LB5

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pedobacter sp. GW460-11-11-14-LB5 1.0 CA265_RS10765 EamA family transporter 1.0 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.36 15
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1397 putative membrane protein (NCBI ptt file) 0.46 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS19240 EamA family transporter 0.48 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA low > 72
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS11675 drug/metabolite exporter YedA 0.19 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_06270 hypothetical protein 0.24 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_5045 Permease of the drug/metabolite transporter (DMT) superfamily 0.24 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_15525 hypothetical protein 0.24 AO356_21435 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2735 Permease of the drug/metabolite transporter (DMT) superfamily 0.25 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas sp. RS175 0.26 PFR28_03826 putative inner membrane transporter YedA 0.25 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1408 Permease of the drug/metabolite transporter (DMT) superfamily 0.25 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas simiae WCS417 0.25 PS417_24505 membrane protein 0.25 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.25 PFLU_RS26430 drug/metabolite exporter YedA 0.25 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS26430 drug/metabolite exporter YedA 0.25 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas putida KT2440 0.24 PP_4767 amino acid exporter for phenylalanine, threonine 0.25 PP_1994 tRNA pseudouridine (38-40)synthase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_4298 Protein of unknown function DUF6 0.24 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_4298 Protein of unknown function DUF6 0.24 Psyr_1662 tRNA pseudouridine synthase low > 86
Rahnella sp. WP5 0.23 EX31_RS23955 drug/metabolite exporter YedA 0.25 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Pseudomonas sp. S08-1 0.23 OH686_04575 hypothetical protein 0.23 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Klebsiella michiganensis M5al 0.21 BWI76_RS18410 drug/metabolite exporter YedA 0.26 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.4970.1 Permease of the drug/metabolite transporter (DMT) superfamily 0.22 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Lysobacter sp. OAE881 0.21 ABIE51_RS03200 drug/metabolite exporter YedA 0.22 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Escherichia coli ECRC62 0.20 BNILDI_15030 yedA drug/metabolite exporter YedA 0.27 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Serratia liquefaciens MT49 0.20 IAI46_07395 drug/metabolite exporter YedA 0.25 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Escherichia coli ECOR38 0.19 HEPCGN_03970 yedA drug/metabolite exporter YedA 0.27 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF3998 Permease of the drug/metabolite transporter (DMT) superfamily 0.26 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_11930 yedA drug/metabolite exporter YedA 0.19 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Rhodanobacter denitrificans MT42 0.19 LRK55_RS11680 drug/metabolite exporter YedA 0.19 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS11955 drug/metabolite exporter YedA 0.19 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Escherichia fergusonii Becca 0.18 EFB2_01988 putative inner membrane transporter YedA 0.27 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli BW25113 0.18 b1959 yedA predicted inner membrane protein (NCBI) 0.27 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli ECRC101 0.18 MCAODC_19785 yedA drug/metabolite exporter YedA 0.27 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC99 0.18 KEDOAH_02485 yedA drug/metabolite exporter YedA 0.27 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.18 OHPLBJKB_01769 putative inner membrane transporter YedA 0.27 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli ECRC98 0.18 JDDGAC_00195 yedA drug/metabolite exporter YedA 0.27 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli Nissle 1917 0.18 ECOLIN_RS11140 drug/metabolite exporter YedA 0.27 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 55
Escherichia coli ECRC102 0.18 NIAGMN_02445 yedA drug/metabolite exporter YedA 0.27 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC100 0.18 OKFHMN_25610 yedA drug/metabolite exporter YedA 0.27 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase low > 80
Escherichia coli ECOR27 0.18 NOLOHH_16240 yedA drug/metabolite exporter YedA 0.27 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Enterobacter sp. TBS_079 0.17 MPMX20_02955 putative inner membrane transporter YedA 0.27 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Enterobacter asburiae PDN3 0.17 EX28DRAFT_0595 Predicted permease, DMT superfamily 0.27 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Acidovorax sp. GW101-3H11 0.16 Ac3H11_4554 Permease of the drug/metabolite transporter (DMT) superfamily 0.22 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS05485 EamA family transporter 0.29 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Burkholderia phytofirmans PsJN 0.16 BPHYT_RS13190 membrane protein 0.30 BPHYT_RS33885 tRNA pseudouridine synthase A low > 109
Paraburkholderia graminis OAS925 0.16 ABIE53_002851 drug/metabolite transporter (DMT)-like permease 0.30 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.15 H281DRAFT_00402 Permease of the drug/metabolite transporter (DMT) superfamily 0.29 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS31400 GntR family transcriptional regulator 0.25 RR42_RS14370 tRNA pseudouridine synthase A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF134 Permease of the drug/metabolite transporter (DMT) superfamily 0.22 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Ralstonia sp. UNC404CL21Col 0.14 ABZR87_RS20410 EamA family transporter 0.26 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Rhizobium sp. OAE497 0.14 ABIE40_RS28500 EamA family transporter 0.22 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA low > 107
Ralstonia solanacearum GMI1000 0.14 RS_RS21045 GntR family transcriptional regulator 0.25 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia solanacearum PSI07 0.14 RPSI07_RS03405 GntR family transcriptional regulator 0.25 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Ralstonia solanacearum UW163 0.14 UW163_RS19390 GntR family transcriptional regulator 0.25 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.14 RALBFv3_RS19785 GntR family transcriptional regulator 0.25 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Bosea sp. OAE506 0.14 ABIE41_RS06560 EamA family transporter 0.23 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA low > 77
Variovorax sp. SCN45 0.13 GFF940 Permease of the drug/metabolite transporter (DMT) superfamily 0.25 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Variovorax sp. OAS795 0.13 ABID97_RS13970 drug/metabolite exporter YedA 0.24 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Dickeya dianthicola 67-19 0.12 HGI48_RS08790 EamA family transporter 0.26 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Dickeya dadantii 3937 0.12 DDA3937_RS08650 EamA family transporter 0.26 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Dickeya dianthicola ME23 0.12 DZA65_RS09080 EamA family transporter 0.26 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Kangiella aquimarina DSM 16071 0.12 B158DRAFT_1202 EamA-like transporter family. 0.29 B158DRAFT_1483 pseudouridylate synthase I low > 40
Magnetospirillum magneticum AMB-1 0.12 AMB_RS22180 EamA/RhaT family transporter 0.25 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA low > 64
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_2027 Permeases of the drug/metabolite transporter (DMT) superfamily 0.22 Ga0059261_0647 tRNA pseudouridine(38-40) synthase low > 68
Rhodospirillum rubrum S1H 0.11 Rru_A3272 Protein of unknown function DUF6, transmembrane (NCBI) 0.24 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Sinorhizobium meliloti 1021 0.10 SM_b20885 hypothetical protein 0.25 SMc01099 tRNA pseudouridine synthase A low > 103
Alteromonas macleodii MIT1002 0.10 MIT1002_04053 putative DMT superfamily transporter inner membrane protein 0.28 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Erwinia tracheiphila SCR3 0.10 LU632_RS09305 EamA family transporter 0.24 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Agrobacterium fabrum C58 0.09 Atu2079 ABC transporter, membrane spanning protein 0.24 Atu0368 tRNA pseudouridine synthase I low > 89
Acinetobacter radioresistens SK82 0.09 MPMX26_00851 putative amino-acid metabolite efflux pump 0.27 MPMX26_00352 tRNA pseudouridine synthase A — —
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS04980 EamA family transporter 0.26 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Azospirillum sp. SherDot2 0.09 MPMX19_03412 putative cystine transporter YijE 0.25 MPMX19_02005 tRNA pseudouridine synthase A — —
Bacteroides ovatus ATCC 8483 0.09 BACOVA_04840 putative membrane protein 0.48 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Pectobacterium carotovorum WPP14 0.09 HER17_RS13320 DMT family transporter 0.28 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75

Not shown: 0 genomes with orthologs for CA265_RS10765 only; 26 genomes with orthologs for CA265_RS15580 only