| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS06780 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 1.0 | BWI76_RS12955 | | multidrug efflux RND transporter permease subunit OqxB | 0.40 | 15 |
| Enterobacter sp. TBS_079 | 0.87 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | 0.93 | MPMX20_01155 | | multidrug efflux RND transporter permease subunit OqxB3 | low | > 85 |
| Enterobacter asburiae PDN3 | 0.84 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | 0.92 | EX28DRAFT_1472 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.78 | GFF4380 | | Membrane fusion protein of RND family multidrug efflux pump | 0.54 | GFF4246 | | RND efflux system, inner membrane transporter CmeB | low | > 78 |
| Pantoea sp. MT58 | 0.74 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.87 | IAI47_10310 | | multidrug efflux RND transporter permease subunit OqxB | low | > 76 |
| Rahnella sp. WP5 | 0.74 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | 0.84 | EX31_RS01495 | | multidrug efflux RND transporter permease subunit | low | > 89 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | 0.84 | IAI46_09925 | | multidrug efflux RND transporter permease subunit SdeB | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_2823 | | Multidrug efflux RND membrane fusion protein MexC | 0.57 | Pf6N2E2_948 | | Multidrug efflux transporter MexF | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_04875 | | antibiotic transporter | 0.57 | AO356_27605 | | transporter | low | > 104 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.51 | Psyr_4007 | | Secretion protein HlyD | 0.57 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | low | > 86 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_00632 | | putative efflux pump periplasmic linker TtgA | 0.57 | PFR28_01728 | | multidrug efflux RND transporter permease subunit OqxB27 | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.51 | Psyr_4007 | | Secretion protein HlyD | 0.57 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | low | > 86 |
| Pseudomonas sp. S08-1 | 0.50 | OH686_16045 | | Multidrug efflux system, membrane fusion component | 0.56 | OH686_01005 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_0309 | | RND family efflux transporter, MFP subunit | 0.56 | Psest_2144 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 67 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.58 | PFLU_RS14260 | | efflux RND transporter permease subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.58 | PFLU_RS14260 | | efflux RND transporter permease subunit | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_4580 | | Multidrug efflux RND membrane fusion protein MexC | 0.57 | PfGW456L13_3060 | | Multidrug efflux transporter MexF | low | > 87 |
| Pseudomonas simiae WCS417 | 0.48 | PS417_06775 | | antibiotic transporter | 0.58 | PS417_13190 | | transporter | low | > 88 |
| Pseudomonas putida KT2440 | 0.48 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | 0.57 | PP_3426 | | Multidrug efflux RND transporter MexF | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_3247 | | Multidrug efflux RND membrane fusion protein MexC | 0.57 | Pf1N1B4_4864 | | Multidrug efflux transporter MexF | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | 0.81 | Xcc-8004.3477.1 | | RND efflux system, inner membrane transporter CmeB | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS06810 | | hemolysin D | 0.53 | HSERO_RS01560 | | transporter | low | > 78 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_17300 | | antibiotic transporter | 0.56 | AO353_23960 | | transporter | low | > 101 |
| Azospirillum brasilense Sp245 | 0.46 | AZOBR_RS30180 | | hemolysin D | 0.56 | AZOBR_RS28205 | | transporter | low | > 97 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | QEN71_RS20105 | | efflux RND transporter permease subunit | 0.50 | 92 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS34600 | | hemolysin D | 0.55 | BPHYT_RS22515 | | multidrug efflux RND transporter permease subunit | low | > 109 |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_05883 | | Multidrug resistance protein MexA | 0.54 | MPMX19_02968 | | multidrug efflux RND transporter permease subunit OqxB28 | low | > 112 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | 0.54 | ABZR86_RS15400 | | efflux RND transporter permease subunit | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS32415 | | hemolysin D | 0.54 | RR42_RS27685 | | multidrug efflux RND transporter permease subunit | low | > 128 |
| Rhodospirillum rubrum S1H | 0.45 | Rru_A2050 | | Secretion protein HlyD (NCBI) | 0.55 | Rru_A0886 | | Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) | low | > 58 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_01000 | | membrane fusion protein, multidrug efflux system | 0.55 | H281DRAFT_03190 | | multidrug efflux pump | low | > 103 |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS19790 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | RALBFv3_RS18375 | | multidrug efflux RND transporter permease subunit | low | > 76 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS19385 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | UW163_RS20755 | | multidrug efflux RND transporter permease subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 0.56 | ABZR87_RS19400 | | efflux RND transporter permease subunit | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS21035 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | RS_RS22490 | | multidrug efflux RND transporter permease subunit | low | > 80 |
| Shewanella oneidensis MR-1 | 0.44 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | 0.54 | SO3492 | mexF | RND multidrug efflux transporter MexF (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | 0.54 | Shewana3_1078 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | low | > 73 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | RPSI07_RS05175 | | multidrug efflux RND transporter permease subunit | low | > 81 |
| Rhizobium sp. OAE497 | 0.43 | ABIE40_RS24220 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | ABIE40_RS14875 | | multidrug efflux RND transporter permease subunit | low | > 107 |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | 0.57 | ABID97_RS17350 | | efflux RND transporter permease subunit | low | > 91 |
| Agrobacterium fabrum C58 | 0.37 | Atu3203 | | RND multidrug efflux membrane permease | 0.53 | Atu2483 | | AcrB/AcrD/AcrF family protein | low | > 89 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.58 | Ac3H11_258 | | RND multidrug efflux transporter; Acriflavin resistance protein | low | > 79 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | 0.53 | OKGIIK_14955 | oqxB | multidrug efflux RND transporter permease subunit | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | 0.54 | LRK54_RS08140 | | multidrug efflux RND transporter permease subunit | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | 0.54 | LRK55_RS07890 | | efflux RND transporter permease subunit | low | > 63 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | 0.70 | ABIE51_RS01060 | | multidrug efflux RND transporter permease subunit | low | > 62 |
Not shown: 28 genomes with orthologs for BWI76_RS06780 only; 10 genomes with orthologs for BWI76_RS12955 only