Conservation of cofitness between BPHYT_RS01650 and BPHYT_RS14535 in Burkholderia phytofirmans PsJN

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS01650 23S rRNA methyltransferase 1.0 BPHYT_RS14535 nicotinate phosphoribosyltransferase 0.32 15
Paraburkholderia bryophila 376MFSha3.1 0.94 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.98 H281DRAFT_04330 nicotinate phosphoribosyltransferase low > 103
Paraburkholderia graminis OAS925 0.94 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.97 ABIE53_003069 nicotinate phosphoribosyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.91 QEN71_RS04445 nicotinate phosphoribosyltransferase low > 153
Ralstonia sp. UNC404CL21Col 0.76 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase 0.75 ABZR87_RS10040 nicotinate phosphoribosyltransferase low > 80
Ralstonia solanacearum PSI07 0.76 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase 0.76 RPSI07_RS19135 nicotinate phosphoribosyltransferase low > 81
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase 0.75 RALBFv3_RS14325 nicotinate phosphoribosyltransferase 0.77 71
Ralstonia solanacearum UW163 0.76 UW163_RS03910 class I SAM-dependent rRNA methyltransferase 0.75 UW163_RS11790 nicotinate phosphoribosyltransferase — —
Ralstonia solanacearum GMI1000 0.75 RS_RS00255 class I SAM-dependent rRNA methyltransferase 0.75 RS_RS05105 nicotinate phosphoribosyltransferase low > 80
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS01670 23S rRNA methyltransferase 0.75 RR42_RS14205 nicotinate phosphoribosyltransferase low > 128
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.33 CSW01_14505 nicotinate phosphoribosyltransferase low > 62
Variovorax sp. SCN45 0.47 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) 0.74 GFF2870 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) low > 127
Klebsiella michiganensis M5al 0.47 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.37 BWI76_RS09885 nicotinate phosphoribosyltransferase low > 92
Escherichia coli ECRC98 0.46 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 JDDGAC_08980 pncB nicotinate phosphoribosyltransferase low > 86
Escherichia coli ECRC101 0.46 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 MCAODC_24760 pncB nicotinate phosphoribosyltransferase low > 87
Escherichia coli ECRC102 0.46 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 NIAGMN_03090 pncB nicotinate phosphoribosyltransferase — —
Escherichia coli ECRC99 0.46 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 KEDOAH_22365 pncB nicotinate phosphoribosyltransferase — —
Escherichia coli ECRC100 0.46 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 OKFHMN_05370 pncB nicotinate phosphoribosyltransferase low > 80
Escherichia coli ECRC62 0.46 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 BNILDI_20180 pncB nicotinate phosphoribosyltransferase low > 75
Enterobacter sp. TBS_079 0.46 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.38 MPMX20_01589 Nicotinate phosphoribosyltransferase low > 85
Escherichia coli BW25113 0.46 b0967 yccW predicted methyltransferase (RefSeq) 0.40 b0931 pncB nicotinate phosphoribosyltransferase (NCBI) low > 76
Enterobacter asburiae PDN3 0.46 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.38 EX28DRAFT_2005 nicotinate phosphoribosyltransferase low > 76
Escherichia coli BL21 0.46 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.40 ECD_00935 nicotinate phosphoribosyltransferase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.40 OHPLBJKB_02735 Nicotinate phosphoribosyltransferase low > 73
Escherichia coli Nissle 1917 0.46 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 ECOLIN_RS04930 nicotinate phosphoribosyltransferase — —
Escherichia coli ECOR27 0.46 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 NOLOHH_21925 pncB nicotinate phosphoribosyltransferase low > 75
Escherichia coli ECOR38 0.46 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.40 HEPCGN_23155 pncB nicotinate phosphoribosyltransferase low > 87
Erwinia tracheiphila SCR3 0.46 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.38 LU632_RS09925 pncB nicotinate phosphoribosyltransferase — —
Escherichia fergusonii Becca 0.46 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.40 EFB2_03133 Nicotinate phosphoribosyltransferase low > 86
Pantoea sp. MT58 0.46 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.38 IAI47_12750 nicotinate phosphoribosyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF3258 LSU m5C1962 methyltransferase RlmI 0.38 GFF3695 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) low > 78
Variovorax sp. OAS795 0.45 ABID97_RS06155 class I SAM-dependent methyltransferase 0.74 ABID97_RS10590 nicotinate phosphoribosyltransferase low > 91
Acidovorax sp. GW101-3H11 0.45 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.73 Ac3H11_2601 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) low > 79
Rahnella sp. WP5 0.44 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.39 EX31_RS18130 nicotinate phosphoribosyltransferase low > 89
Serratia liquefaciens MT49 0.44 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.39 IAI46_08765 nicotinate phosphoribosyltransferase low > 86
Bacteroides ovatus ATCC 8483 0.35 BACOVA_05134 hypothetical protein 0.26 BACOVA_01468 nicotinate phosphoribosyltransferase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.33 BT4331 conserved hypothetical protein (NCBI ptt file) 0.27 BT1913 nicotinate phosphoribosyltransferase (NCBI ptt file) low > 81
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.70 Xcc-8004.4407.1 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) low > 74
Azospirillum sp. SherDot2 0.26 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I 0.22 MPMX19_03477 Nicotinate phosphoribosyltransferase low > 112
Pseudomonas sp. RS175 0.26 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.48 PFR28_05149 Nicotinate phosphoribosyltransferase 2 low > 88
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase 0.75 ABZR86_RS00460 nicotinate phosphoribosyltransferase low > 74
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.48 PfGW456L13_129 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) low > 87
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.48 Pf6N2E2_3585 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) low > 103
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_13260 SAM-dependent methyltransferase 0.48 AO356_08520 nicotinate phosphoribosyltransferase low > 104
Pseudomonas putida KT2440 0.26 PP_5127 ribosomal RNA large subunit methyltransferase I 0.45 PP_4868 Nicotinate phosphoribosyltransferase low > 96
Pseudomonas simiae WCS417 0.26 PS417_26880 SAM-dependent methyltransferase 0.48 PS417_02635 nicotinate phosphoribosyltransferase low > 88
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_08330 SAM-dependent methyltransferase 0.47 AO353_13320 nicotinate phosphoribosyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.48 Pf1N1B4_1386 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) low > 87
Pseudomonas stutzeri RCH2 0.25 Psest_0236 Predicted SAM-dependent methyltransferases 0.48 Psest_1171 nicotinate phosphoribosyltransferase low > 67
Phaeobacter inhibens DSM 17395 0.25 PGA1_c19990 ribosomal RNA large subunit methyltransferase I 0.22 PGA1_c32130 nicotinate phosphoribosyltransferase PncB low > 62
Pseudomonas sp. S08-1 0.25 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.48 OH686_03820 nicotinate phosphoribosyltransferase low > 80
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4764 SAM-dependent methyltransferase 0.49 Psyr_0595 Nicotinate phosphoribosyltransferase low > 86
Rhodanobacter denitrificans MT42 0.25 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.75 LRK55_RS14435 nicotinate phosphoribosyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.75 LRK54_RS14720 nicotinate phosphoribosyltransferase low > 59
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4764 SAM-dependent methyltransferase 0.49 Psyr_0595 Nicotinate phosphoribosyltransferase low > 86
Pseudomonas fluorescens SBW25 0.25 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.48 PFLU_RS02705 nicotinate phosphoribosyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.48 PFLU_RS02705 nicotinate phosphoribosyltransferase low > 109
Dinoroseobacter shibae DFL-12 0.23 Dshi_1771 hypothetical protein (RefSeq) 0.26 Dshi_3345 nicotinate phosphoribosyltransferase (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.74 OKGIIK_03545 pncB nicotinate phosphoribosyltransferase low > 52

Not shown: 23 genomes with orthologs for BPHYT_RS01650 only; 13 genomes with orthologs for BPHYT_RS14535 only