| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_2183 | | periplasmic serine protease, Do/DeqQ family | 1.0 | B158DRAFT_1560 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | 0.50 | 1 |
| Marinobacter adhaerens HP15 | 0.36 | HP15_779 | | serine protease MucD precursor | 0.41 | HP15_2937 | | two component transcriptional regulator, winged helix family | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_3096 | | periplasmic serine protease, Do/DeqQ family | 0.52 | Psest_3883 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | — | — |
| Pseudomonas sp. S08-1 | 0.35 | OH686_20060 | | HtrA protease/chaperone protein | 0.43 | OH686_00055 | | Two-component system response regulator QseB | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_17640 | | serine peptidase | 0.53 | AO353_02815 | | transcriptional regulator | low | > 101 |
| Pseudomonas putida KT2440 | 0.35 | PP_1430 | | putative periplasmic serine endoprotease DegP-like | 0.56 | PP_1186 | | two component system DNA-binding transcriptional dual regulator | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.35 | PfGW456L13_4513 | | HtrA protease/chaperone protein | 0.55 | PfGW456L13_2011 | | Transcriptional regulatory protein PhoP | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_3955 | | Peptidase S1, chymotrypsin:PDZ/DHR/GLGF | 0.52 | Psyr_3709 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_3955 | | Peptidase S1, chymotrypsin:PDZ/DHR/GLGF | 0.52 | Psyr_3709 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS07245 | | DegQ family serine endoprotease | 0.51 | PFLU_RS23130 | | response regulator transcription factor | 0.57 | 99 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS07245 | | DegQ family serine endoprotease | 0.51 | PFLU_RS23130 | | response regulator transcription factor | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.34 | Pf6N2E2_2753 | | HtrA protease/chaperone protein | 0.55 | Pf6N2E2_5704 | | Transcriptional regulatory protein PhoP | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_04560 | | serine peptidase | 0.55 | AO356_18965 | | transcriptional regulator | low | > 104 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_07135 | | serine peptidase | 0.53 | PS417_21515 | | transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.34 | Pf1N1B4_3326 | | HtrA protease/chaperone protein | 0.53 | Pf1N1B4_3483 | | Transcriptional regulatory protein PhoP | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS07170 | | DegQ family serine endoprotease | 0.65 | ABZR86_RS18360 | | response regulator transcription factor | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.34 | ABCV34_RS08340 | | DegQ family serine endoprotease | 0.45 | ABCV34_RS15610 | | response regulator transcription factor | — | — |
| Pseudomonas sp. RS175 | 0.33 | PFR28_00693 | | Periplasmic serine endoprotease DegP | 0.54 | PFR28_03244 | | Transcriptional regulatory protein PhoP | low | > 88 |
| Rhodanobacter denitrificans FW104-10B01 | 0.33 | LRK54_RS16950 | | Do family serine endopeptidase | 0.64 | LRK54_RS05985 | | response regulator transcription factor | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS16665 | | Do family serine endopeptidase | 0.64 | LRK55_RS05740 | | response regulator transcription factor | — | — |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS17805 | | serine protease | 0.51 | AZOBR_RS18790 | | transcriptional regulator | low | > 97 |
| Dechlorosoma suillum PS | 0.33 | Dsui_1606 | | periplasmic serine protease, Do/DeqQ family | 0.35 | Dsui_0266 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | low | > 51 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_00842 | | Periplasmic pH-dependent serine endoprotease DegQ precursor | 0.64 | MIT1002_01421 | | Transcriptional regulatory protein PhoP | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_02161 | | Periplasmic pH-dependent serine endoprotease DegQ | 0.34 | MPMX26_02034 | | Transcriptional regulatory protein QseB | — | — |
| Lysobacter sp. OAE881 | 0.32 | ABIE51_RS13880 | | DegQ family serine endoprotease | 0.66 | ABIE51_RS03940 | | response regulator transcription factor | low | > 62 |
| Ralstonia solanacearum UW163 | 0.31 | UW163_RS11925 | | peptidase | 0.34 | UW163_RS04425 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.31 | RALBFv3_RS14460 | | peptidase | 0.34 | RALBFv3_RS09170 | | DNA-binding response regulator | low | > 76 |
| Shewanella loihica PV-4 | 0.31 | Shew_3296 | | protease Do (RefSeq) | 0.54 | Shew_2695 | | two component transcriptional regulator (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.30 | SO3942 | | serine protease, HtrA/DegQ/DegS family (NCBI ptt file) | 0.53 | SO4647 | | DNA-binding response regulator (NCBI ptt file) | — | — |
| Shewanella amazonensis SB2B | 0.30 | Sama_3073 | | serine protease (RefSeq) | 0.52 | Sama_3303 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.30 | Shewana3_0690 | | peptidase Do (RefSeq) | 0.52 | Shewana3_4025 | | two component transcriptional regulator (RefSeq) | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS19985 | | serine endoprotease DegQ | 0.40 | HER17_RS11640 | | two-component system response regulator PhoP | low | > 75 |
| Escherichia fergusonii Becca | 0.29 | EFB2_03883 | | Periplasmic serine endoprotease DegP | 0.41 | EFB2_02845 | | Transcriptional regulatory protein PhoP | 0.49 | 30 |
| Escherichia coli ECOR38 | 0.29 | HEPCGN_08205 | degP | serine endoprotease DegP | 0.41 | HEPCGN_24200 | phoP | two-component system response regulator PhoP | low | > 87 |
| Escherichia coli Nissle 1917 | 0.29 | ECOLIN_RS00895 | | serine endoprotease DegP | 0.41 | ECOLIN_RS06610 | | two-component system response regulator PhoP | — | — |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_08105 | degP | serine endoprotease DegP | 0.41 | NIAGMN_24875 | phoP | two-component system response regulator PhoP | — | — |
| Escherichia coli BL21 | 0.28 | ECD_00160 | | serine endoprotease (protease Do), membrane-associated | 0.41 | ECD_01128 | | response regulator in two-component regulatory system with PhoQ | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_03501 | | Periplasmic serine endoprotease DegP | 0.41 | OHPLBJKB_02538 | | Transcriptional regulatory protein PhoP | low | > 73 |
| Escherichia coli ECOR27 | 0.28 | NOLOHH_02600 | degP | serine endoprotease DegP | 0.41 | NOLOHH_20915 | phoP | two-component system response regulator PhoP | low | > 75 |
| Escherichia coli ECRC62 | 0.28 | BNILDI_09070 | degP | serine endoprotease DegP | 0.41 | BNILDI_19080 | phoP | two-component system response regulator PhoP | low | > 75 |
| Escherichia coli ECRC100 | 0.28 | OKFHMN_10255 | degP | serine endoprotease DegP | 0.41 | OKFHMN_00730 | phoP | two-component system response regulator PhoP | low | > 80 |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_17900 | degP | serine endoprotease DegP | 0.41 | KEDOAH_24815 | phoP | two-component system response regulator PhoP | — | — |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_13850 | degP | serine endoprotease DegP | 0.41 | JDDGAC_06635 | phoP | two-component system response regulator PhoP | low | > 86 |
| Escherichia coli BW25113 | 0.28 | b0161 | degP | serine endoprotease (protease Do), membrane-associated (NCBI) | 0.41 | b1130 | phoP | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.28 | LU632_RS21355 | | Do family serine endopeptidase | 0.40 | LU632_RS14590 | phoP | two-component system response regulator PhoP | low | > 74 |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS25365 | | serine endoprotease DegQ | 0.40 | BWI76_RS11280 | | two-component system response regulator PhoP | — | — |
| Enterobacter asburiae PDN3 | 0.28 | EX28DRAFT_3283 | | periplasmic serine protease, Do/DeqQ family | 0.40 | EX28DRAFT_1800 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 76 |
| Enterobacter sp. TBS_079 | 0.28 | MPMX20_04138 | | Periplasmic pH-dependent serine endoprotease DegQ | 0.41 | MPMX20_01811 | | Transcriptional regulatory protein PhoP | low | > 85 |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_3911 | | protease Do (RefSeq) | 0.34 | Dshi_1508 | | two component transcriptional regulator, winged helix family (RefSeq) | low | > 64 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.28 | GFF60 | | HtrA protease/chaperone protein | 0.40 | GFF3415 | | Transcriptional regulatory protein PhoP | low | > 78 |
| Pantoea sp. MT58 | 0.28 | IAI47_17260 | | serine endoprotease DegQ | 0.40 | IAI47_11930 | | two-component system response regulator PhoP | low | > 76 |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS01605 | | serine endoprotease DegQ | 0.37 | DDA3937_RS11500 | | two-component system response regulator PhoP | low | > 74 |
| Escherichia coli ECRC101 | 0.28 | MCAODC_00770 | degP | serine endoprotease DegP | 0.41 | MCAODC_22355 | phoP | two-component system response regulator PhoP | low | > 87 |
| Dickeya dianthicola ME23 | 0.28 | DZA65_RS01585 | | serine endoprotease DegQ | 0.37 | DZA65_RS11880 | | two-component system response regulator PhoP | low | > 75 |
| Dickeya dianthicola 67-19 | 0.28 | HGI48_RS01520 | | serine endoprotease DegQ | 0.37 | HGI48_RS11545 | | two-component system response regulator PhoP | low | > 71 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_22390 | | serine endoprotease DegQ | 0.40 | IAI46_10395 | | two-component system response regulator PhoP | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.27 | CSW01_03020 | | serine endoprotease DegQ | 0.50 | CSW01_08235 | | DNA-binding response regulator | low | > 62 |
| Sphingomonas koreensis DSMZ 15582 | 0.26 | Ga0059261_1382 | | periplasmic serine protease, Do/DeqQ family | 0.49 | Ga0059261_1369 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 68 |
| Caulobacter crescentus NA1000 | 0.26 | CCNA_02846 | | DegP/HtrA-family serine protease | 0.46 | CCNA_02854 | | two-component response regulator | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.26 | CCNA_02846 | | DegP/HtrA-family serine protease | 0.46 | CCNA_02854 | | two-component response regulator | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.25 | A4249_RS10815 | | Do family serine endopeptidase | 0.46 | A4249_RS15665 | | response regulator transcription factor | low | > 48 |
Not shown: 2 genomes with orthologs for B158DRAFT_2183 only; 24 genomes with orthologs for B158DRAFT_1560 only