Conservation of cofitness between ABZR87_RS01855 and ABZR87_RS03450 in Ralstonia sp. UNC404CL21Col

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS01855 A24 family peptidase 1.0 ABZR87_RS03450 type II secretion system secretin GspD 0.71 7
Ralstonia solanacearum UW163 0.86 UW163_RS07435 prepilin peptidase 0.79 UW163_RS05885 type II secretion system protein GspD — —
Ralstonia solanacearum IBSBF1503 0.86 RALBFv3_RS06190 prepilin peptidase 0.79 RALBFv3_RS07740 type II secretion system protein GspD 0.77 4
Ralstonia solanacearum GMI1000 0.83 RS_RS14140 prepilin peptidase 0.80 RS_RS15640 type II secretion system protein GspD 0.48 6
Ralstonia solanacearum PSI07 0.83 RPSI07_RS11050 prepilin peptidase 0.79 RPSI07_RS09520 type II secretion system protein GspD 0.55 12
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS17990 methyltransferase 0.55 RR42_RS19520 general secretion pathway protein GspD 0.89 3
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_1508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.16 PfGW456L13_266 General secretion pathway protein D low > 87
Pseudomonas sp. S08-1 0.48 OH686_16495 Leader peptidase (Prepilin peptidase) / N-methyltransferase 0.21 OH686_11840 type II secretion system protein D low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS27315 A24 family peptidase 0.19 QEN71_RS29510 type II secretion system secretin GspD low > 153
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12285 prepilin peptidase 0.16 CSW01_13790 type II secretion system protein GspD — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS03940 prepilin peptidase 0.32 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS03940 prepilin peptidase 0.32 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0796 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A 0.08 Psyr_3141 type II and III secretion system protein:NolW-like protein 0.56 60
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0796 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A 0.08 Psyr_3141 type II and III secretion system protein:NolW-like protein 0.65 5
Pseudomonas stutzeri RCH2 0.45 Psest_3286 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 0.19 Psest_2577 general secretion pathway protein D low > 67
Pseudomonas simiae WCS417 0.44 PS417_03895 methyltransferase 0.31 PS417_11295 general secretion pathway protein GspD low > 88
Shewanella sp. ANA-3 0.44 Shewana3_0417 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A (RefSeq) 0.16 Shewana3_0151 general secretion pathway protein D (RefSeq) 0.85 4
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF1281 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.38 GFF1390 General secretion pathway protein D low > 90
Shewanella oneidensis MR-1 0.43 SO0414 pilD type 4 prepilin-like proteins leader peptide processing enzyme (NCBI ptt file) 0.16 SO0166 gspD general secretion pathway protein D (NCBI ptt file) 0.85 4
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS17155 peptidase A24 0.19 BPHYT_RS19595 general secretion pathway protein GspD 0.50 2
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_2140 type 4 prepilin peptidase 1 (EC:3.4.23.43). Aspartic peptidase. MEROPS family A24A 0.18 B158DRAFT_0689 general secretion pathway protein D — —
Marinobacter adhaerens HP15 0.43 HP15_2411 type IV pilus prepilin peptidase PilD 0.13 HP15_2355 type II and III secretion system protein 0.82 1
Shewanella amazonensis SB2B 0.43 Sama_0367 prepilin peptidase (RefSeq) 0.17 Sama_0169 type II and III secretion system protein (RefSeq) 0.78 1
Paraburkholderia graminis OAS925 0.42 ABIE53_003596 leader peptidase (prepilin peptidase)/N-methyltransferase 0.38 ABIE53_000295 general secretion pathway protein D 0.90 3
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_06255 leader peptidase (prepilin peptidase) / N-methyltransferase 0.38 H281DRAFT_02356 general secretion pathway protein D 0.64 1
Acidovorax sp. GW101-3H11 0.42 Ac3H11_4764 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.36 Ac3H11_2030 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) — —
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_16005 methyltransferase 0.31 AO356_24790 type II secretion system protein GspD low > 104
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_14320 methyltransferase 0.18 AO353_12545 type II secretion system protein GspD low > 101
Pseudomonas sp. RS175 0.41 PFR28_03733 Type 4 prepilin-like proteins leader peptide-processing enzyme 0.30 PFR28_01750 Secretin XcpQ low > 88
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_5140 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.32 Pf6N2E2_651 General secretion pathway protein D low > 103
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS10050 A24 family peptidase 0.11 ABZR86_RS13065 type II secretion system secretin GspD 0.71 3
Shewanella loihica PV-4 0.40 Shew_3440 prepilin peptidase (RefSeq) 0.17 Shew_3619 general secretion pathway protein D (RefSeq) 0.51 56
Dickeya dadantii 3937 0.39 DDA3937_RS14750 prepilin peptidase 0.17 DDA3937_RS14800 type II secretion system secretin GspD 0.58 2
Alteromonas macleodii MIT1002 0.38 MIT1002_03011 Pectic enzymes secretion protein OutO 0.18 MIT1002_03976 Pullulanase secretion envelope PulD — —
Variovorax sp. SCN45 0.38 GFF2508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.35 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 127
Dickeya dianthicola 67-19 0.38 HGI48_RS14685 prepilin peptidase 0.12 HGI48_RS15450 type II secretion system secretin GspD low > 71
Acinetobacter radioresistens SK82 0.38 MPMX26_00244 Type 4 prepilin-like proteins leader peptide-processing enzyme 0.20 MPMX26_00196 Secretin XcpQ low > 36
Pectobacterium carotovorum WPP14 0.38 HER17_RS06740 A24 family peptidase 0.14 HER17_RS06685 type II secretion system secretin GspD low > 75
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_10830 pulO prepilin peptidase 0.07 OKGIIK_16265 Type II secretion system protein GspD low > 52
Variovorax sp. OAS795 0.38 ABID97_RS23440 A24 family peptidase 0.35 ABID97_RS06950 type II secretion system secretin GspD low > 91
Dickeya dianthicola ME23 0.37 DZA65_RS15630 prepilin peptidase 0.13 DZA65_RS16270 type II secretion system secretin GspD low > 75
Rhodanobacter denitrificans MT42 0.36 LRK55_RS03730 A24 family peptidase 0.07 LRK55_RS09650 type II secretion system secretin GspD low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS03960 A24 family peptidase 0.07 LRK54_RS10010 type II secretion system secretin GspD low > 59
Rahnella sp. WP5 0.35 EX31_RS16215 prepilin peptidase 0.17 EX31_RS16165 type II secretion system secretin GspD low > 89
Klebsiella michiganensis M5al 0.35 BWI76_RS05035 prepilin peptidase 0.15 BWI76_RS05090 type II secretion system protein GspD — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1345.1 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.18 Xcc-8004.942.1 hypothetical protein — —
Enterobacter sp. TBS_079 0.32 MPMX20_01525 Type 4 prepilin-like proteins leader peptide-processing enzyme 0.13 MPMX20_01515 Putative secretin GspD low > 85
Escherichia coli ECRC100 0.31 OKFHMN_00235 pulO prepilin peptidase 0.15 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli ECRC98 0.31 JDDGAC_30345 pulO prepilin peptidase 0.15 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 86
Escherichia coli ECRC101 0.31 MCAODC_15315 pulO prepilin peptidase 0.15 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli ECRC102 0.31 NIAGMN_28555 pulO prepilin peptidase 0.15 NIAGMN_28605 etpD variant type II secretion system secretin EtpD — —
Erwinia tracheiphila SCR3 0.31 LU632_RS25275 A24 family peptidase 0.15 LU632_RS25230 gspD type II secretion system secretin GspD low > 74
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2069 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 0.18 EX28DRAFT_2079 type II secretion system protein D low > 76
Escherichia coli Nissle 1917 0.27 ECOLIN_RS17100 prepilin peptidase PppA 0.18 ECOLIN_RS17085 type II secretion system secretin GspD low > 55
Escherichia coli ECOR38 0.27 HEPCGN_18035 pppA prepilin peptidase PppA 0.18 HEPCGN_18050 gspD general secretion pathway protein D 0.94 2
Escherichia coli BL21 0.27 ECD_02841 bifunctional prepilin leader peptidase/ methylase 0.18 ECD_02838 putative type II secretion protein GspD 0.91 7
Escherichia fergusonii Becca 0.27 EFB2_00842 Prepilin peptidase PppA 0.18 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_00736 Leader peptidase PppA 0.18 OHPLBJKB_00739 Type II secretion system protein D low > 73
Escherichia coli BW25113 0.26 b2972 b2972 putative peptidase (VIMSS) 0.18 b3325 yheF putative general protein secretion protein (VIMSS) low > 76

Not shown: 10 genomes with orthologs for ABZR87_RS01855 only; 4 genomes with orthologs for ABZR87_RS03450 only