| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS10175 | | MucB/RseB C-terminal domain-containing protein | 1.0 | ABZR87_RS01745 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.59 | 18 |
| Ralstonia solanacearum UW163 | 0.92 | UW163_RS11920 | | sugar dehydratase | 0.78 | UW163_RS07545 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.92 | RALBFv3_RS14455 | | sugar dehydratase | 0.78 | RALBFv3_RS06080 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum GMI1000 | 0.92 | RS_RS05235 | | sugar dehydratase | 0.79 | RS_RS14030 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum PSI07 | 0.92 | RPSI07_RS19005 | | sugar dehydratase | 0.79 | RPSI07_RS11160 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.62 | RR42_RS14070 | | sugar dehydratase | 0.58 | RR42_RS17865 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS04585 | | MucB/RseB C-terminal domain-containing protein | 0.57 | QEN71_RS27225 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.41 | ABIE53_003041 | | sigma-E factor negative regulatory protein RseB | 0.58 | ABIE53_003579 | | AmpD protein | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS14395 | | sugar dehydratase | 0.56 | BPHYT_RS17065 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_04357 | | sigma E regulatory protein, MucB/RseB | 0.58 | H281DRAFT_06273 | | AmpD protein | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.30 | HSERO_RS09635 | | transcriptional regulator | 0.52 | HSERO_RS01880 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 78 |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS08340 | | MucB/RseB C-terminal domain-containing protein | 0.49 | ABID97_RS06410 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF3341 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.47 | GFF594 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Variovorax sp. SCN45 | 0.27 | GFF3865 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.50 | GFF4433 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS08345 | | MucB/RseB C-terminal domain-containing protein | 0.46 | ABCV34_RS09025 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.23 | Ac3H11_1571 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.44 | Ac3H11_4020 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Marinobacter adhaerens HP15 | 0.14 | HP15_777 | | sigma E regulatory protein, MucB/RseB | 0.45 | HP15_1307 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Pseudomonas putida KT2440 | 0.14 | PP_1429 | | Sigma factor AlgU regulatory protein MucB | 0.45 | PP_0789 | | N-acetyl-anhydromuramyl-L-alanine-amidase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.13 | OH686_20055 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.50 | OH686_16530 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | — | — |
| Pseudomonas simiae WCS417 | 0.12 | PS417_07130 | | RNA polymerase sigma-H factor AlgU | 0.49 | PS417_03935 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 88 |
| Escherichia coli ECOR38 | 0.12 | HEPCGN_20530 | rseB | sigma-E factor regulatory protein RseB | 0.47 | HEPCGN_08505 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 87 |
| Escherichia coli ECRC62 | 0.12 | BNILDI_11860 | rseB | sigma-E factor regulatory protein RseB | 0.46 | BNILDI_08740 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Escherichia coli ECRC102 | 0.12 | NIAGMN_19155 | rseB | sigma-E factor regulatory protein RseB | 0.47 | NIAGMN_08375 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli BW25113 | 0.12 | b2571 | rseB | periplasmic negative regulator of sigmaE (NCBI) | 0.46 | b0110 | ampD | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.12 | KEDOAH_06835 | rseB | sigma-E factor regulatory protein RseB | 0.47 | KEDOAH_17630 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia fergusonii Becca | 0.12 | EFB2_01325 | | Sigma-E factor regulatory protein RseB | 0.47 | EFB2_03939 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli ECRC101 | 0.12 | MCAODC_11915 | rseB | sigma-E factor regulatory protein RseB | 0.47 | MCAODC_01040 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.64 | 54 |
| Escherichia coli Nissle 1917 | 0.12 | ECOLIN_RS14550 | | sigma-E factor regulatory protein RseB | 0.47 | ECOLIN_RS00590 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.66 | 47 |
| Escherichia coli BL21 | 0.12 | ECD_02465 | | anti-sigma E factor, binds RseA | 0.46 | ECD_00109 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase | low | > 61 |
| Escherichia coli ECRC100 | 0.12 | OKFHMN_21385 | rseB | sigma-E factor regulatory protein RseB | 0.47 | OKFHMN_10525 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 80 |
| Escherichia coli ECRC98 | 0.12 | JDDGAC_25050 | rseB | sigma-E factor regulatory protein RseB | 0.47 | JDDGAC_14120 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.12 | OHPLBJKB_01136 | | Sigma-E factor regulatory protein RseB | 0.46 | OHPLBJKB_03551 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 73 |
| Escherichia coli ECOR27 | 0.12 | NOLOHH_13060 | rseB | sigma-E factor regulatory protein RseB | 0.46 | NOLOHH_02870 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.11 | Psest_3098 | | Negative regulator of sigma E activity | 0.46 | Psest_0725 | | Negative regulator of beta-lactamase expression | — | — |
| Pseudomonas sp. RS175 | 0.11 | PFR28_00692 | | Sigma factor AlgU regulatory protein MucB | 0.50 | PFR28_00100 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 88 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.11 | GFF2109 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.46 | GFF129 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 78 |
| Pseudomonas fluorescens FW300-N2C3 | 0.11 | AO356_04565 | | RNA polymerase subunit sigma | 0.49 | AO356_07360 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.11 | PfGW456L13_4514 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.49 | PfGW456L13_5081 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.11 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | 0.49 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.11 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | 0.49 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.11 | PFLU_RS07240 | | sigma factor AlgU regulatory protein MucB | 0.50 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.11 | PFLU_RS07240 | | sigma factor AlgU regulatory protein MucB | 0.50 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.11 | AO353_17635 | | RNA polymerase subunit sigma | 0.49 | AO353_05510 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.11 | Pf6N2E2_2754 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.49 | Pf6N2E2_3344 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 103 |
| Enterobacter sp. TBS_079 | 0.11 | MPMX20_03442 | | Sigma-E factor regulatory protein RseB | 0.45 | MPMX20_00801 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Enterobacter asburiae PDN3 | 0.10 | EX28DRAFT_0074 | | sigma E regulatory protein, MucB/RseB | 0.46 | EX28DRAFT_3703 | | N-acetylmuramoyl-L-alanine amidase | — | — |
| Serratia liquefaciens MT49 | 0.10 | IAI46_19575 | | sigma-E factor regulatory protein RseB | 0.44 | IAI46_03535 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Dickeya dianthicola 67-19 | 0.10 | HGI48_RS15840 | | sigma-E factor regulatory protein RseB | 0.48 | HGI48_RS17875 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 71 |
| Dickeya dianthicola ME23 | 0.10 | DZA65_RS16920 | | sigma-E factor regulatory protein RseB | 0.48 | DZA65_RS19020 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.10 | CSW01_12475 | | sigma-E factor regulatory protein RseB | 0.41 | CSW01_12260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.10 | Pf1N1B4_3325 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.49 | Pf1N1B4_1151 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Dickeya dadantii 3937 | 0.10 | DDA3937_RS15755 | | sigma-E factor regulatory protein RseB | 0.47 | DDA3937_RS17945 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 74 |
| Pantoea sp. MT58 | 0.09 | IAI47_04860 | | sigma-E factor regulatory protein RseB | 0.41 | IAI47_15840 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 76 |
| Klebsiella michiganensis M5al | 0.09 | BWI76_RS21345 | | sigma-E factor regulatory protein RseB | 0.46 | BWI76_RS04850 | | N-acetylmuramoyl-L-alanine amidase | low | > 92 |
| Shewanella loihica PV-4 | 0.09 | Shew_1050 | | sigma E regulatory protein, MucB/RseB (RefSeq) | 0.43 | Shew_3434 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.09 | SO1344 | rseB | sigma-E factor regulatory protein RseB (NCBI ptt file) | 0.41 | SO0421 | ampD | AmpD protein (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.08 | Sama_0876 | | putative sigma E regulatory protein, MucB/RseB (RefSeq) | 0.48 | Sama_0372 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.08 | EX31_RS21810 | | sigma-E factor regulatory protein RseB | 0.44 | EX31_RS03510 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 89 |
| Shewanella sp. ANA-3 | 0.08 | Shewana3_3030 | | sigma E regulatory protein, MucB/RseB (RefSeq) | 0.42 | Shewana3_0423 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.07 | HER17_RS05790 | | sigma-E factor regulatory protein RseB | 0.46 | HER17_RS03260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
Not shown: 0 genomes with orthologs for ABZR87_RS10175 only; 4 genomes with orthologs for ABZR87_RS01745 only