| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Brevundimonas sp. GW460-12-10-14-LB2 | 1.0 | A4249_RS03600 | | LacI family DNA-binding transcriptional regulator | 1.0 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.52 | 18 |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_2309 | | transcriptional regulator, LacI family | 0.64 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.66 | 46 |
| Pectobacterium carotovorum WPP14 | 0.26 | HER17_RS03725 | | LacI family DNA-binding transcriptional regulator | 0.40 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli ECOR38 | 0.25 | HEPCGN_22795 | galS | HTH-type transcriptional regulator GalS | 0.41 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Shewanella amazonensis SB2B | 0.25 | Sama_1400 | | periplasmic binding protein/LacI transcriptional regulator (RefSeq) | 0.40 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.27 | 57 |
| Escherichia coli BL21 | 0.25 | ECD_02080 | | galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor | 0.41 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Dickeya dadantii 3937 | 0.25 | DDA3937_RS00055 | | ribose operon transcriptional repressor RbsR | 0.39 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.25 | OHPLBJKB_01560 | | HTH-type transcriptional regulator GalS | 0.41 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | low | > 73 |
| Escherichia coli BW25113 | 0.25 | b2151 | galS | DNA-binding transcriptional repressor (NCBI) | 0.41 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.25 | NOLOHH_15100 | galS | HTH-type transcriptional regulator GalS | 0.41 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli ECRC98 | 0.25 | JDDGAC_27485 | galS | HTH-type transcriptional regulator GalS | 0.41 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | low | > 86 |
| Escherichia fergusonii Becca | 0.25 | EFB2_01705 | | HTH-type transcriptional regulator GalS | 0.41 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.29 | 59 |
| Escherichia coli ECRC102 | 0.25 | NIAGMN_21290 | galS | HTH-type transcriptional regulator GalS | 0.41 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC101 | 0.25 | MCAODC_14575 | galS | HTH-type transcriptional regulator GalS | 0.41 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli ECRC100 | 0.25 | OKFHMN_23525 | galS | HTH-type transcriptional regulator GalS | 0.41 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | low | > 80 |
| Escherichia coli ECRC99 | 0.25 | KEDOAH_04660 | galS | HTH-type transcriptional regulator GalS | 0.41 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli Nissle 1917 | 0.25 | ECOLIN_RS12585 | | HTH-type transcriptional regulator GalS | 0.41 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Dickeya dianthicola 67-19 | 0.25 | HGI48_RS21310 | | ribose operon transcriptional repressor RbsR | 0.39 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | low | > 71 |
| Rahnella sp. WP5 | 0.25 | EX31_RS14230 | | DNA-binding transcriptional regulator CytR | 0.40 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Dickeya dianthicola ME23 | 0.25 | DZA65_RS18545 | | LacI family transcriptional regulator | 0.39 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC62 | 0.25 | BNILDI_14020 | galS | HTH-type transcriptional regulator GalS | 0.41 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_01699 | | LacI-family transcriptional regulator | 0.68 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.24 | Pf6N2E2_164 | | Ribose operon repressor | 0.35 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.24 | AO353_20830 | | LacI family transcriptional regulator | 0.39 | AO353_14420 | | molecular chaperone DnaK | low | > 101 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS23355 | | LacI family transcriptional regulator | 0.40 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Enterobacter asburiae PDN3 | 0.24 | EX28DRAFT_0406 | | Transcriptional regulators | 0.41 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_01699 | | LacI-family transcriptional regulator | 0.68 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 66 |
| Pseudomonas fluorescens FW300-N2C3 | 0.24 | AO356_00955 | | LacI family transcriptional regulator | 0.39 | AO356_16095 | | molecular chaperone DnaK | low | > 104 |
| Vibrio cholerae E7946 ATCC 55056 | 0.24 | CSW01_13525 | | DNA-binding transcriptional regulator CytR | 0.36 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.87 | 34 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.24 | GFF3787 | | Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator | 0.41 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | low | > 78 |
| Pseudomonas syringae pv. syringae B728a | 0.24 | Psyr_2154 | | transcriptional regulator, LacI family | 0.39 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.24 | Psyr_2154 | | transcriptional regulator, LacI family | 0.39 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Ralstonia solanacearum IBSBF1503 | 0.23 | RALBFv3_RS14240 | | LacI family transcriptional regulator | 0.43 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | low | > 76 |
| Pseudomonas sp. RS175 | 0.23 | PFR28_02734 | | Ribose operon repressor | 0.39 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.25 | 51 |
| Ralstonia solanacearum UW163 | 0.23 | UW163_RS11705 | | LacI family transcriptional regulator | 0.43 | UW163_RS03935 | | RNA polymerase-binding protein DksA | — | — |
| Erwinia tracheiphila SCR3 | 0.23 | LU632_RS08515 | galS | HTH-type transcriptional regulator GalS | 0.41 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.23 | Pf1N1B4_6032 | | Ribose operon repressor | 0.39 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS05020 | | LacI family transcriptional regulator | 0.43 | RS_RS00230 | | RNA polymerase-binding protein DksA | low | > 80 |
| Enterobacter sp. TBS_079 | 0.23 | MPMX20_03121 | | HTH-type transcriptional regulator GalS | 0.41 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | low | > 85 |
| Ralstonia solanacearum PSI07 | 0.23 | RPSI07_RS19225 | | LacI family transcriptional regulator | 0.44 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | low | > 81 |
| Alteromonas macleodii MIT1002 | 0.23 | MIT1002_04103 | | Galactose operon repressor | 0.39 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS09955 | | LacI family DNA-binding transcriptional regulator | 0.43 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | 0.43 | 12 |
| Pantoea sp. MT58 | 0.23 | IAI47_10795 | | HTH-type transcriptional repressor PurR | 0.39 | IAI47_15635 | | RNA polymerase-binding protein DksA | low | > 76 |
| Pseudomonas fluorescens SBW25-INTG | 0.22 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.38 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.21 | 104 |
| Pseudomonas fluorescens SBW25 | 0.22 | PFLU_RS20365 | | LacI family DNA-binding transcriptional regulator | 0.38 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Sinorhizobium meliloti 1021 | 0.22 | SM_b20014 | | transcriptional regulator | 0.62 | SMc00469 | | DnaK suppressor protein | — | — |
| Herbaspirillum seropedicae SmR1 | 0.22 | HSERO_RS11495 | | LacI family transcription regulator | 0.40 | HSERO_RS00840 | | molecular chaperone DnaK | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.22 | PfGW456L13_3909 | | Ribose operon repressor | 0.38 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | low | > 87 |
| Paraburkholderia sabiae LMG 24235 | 0.22 | QEN71_RS07355 | | LacI family DNA-binding transcriptional regulator | 0.43 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_03117 | | Catabolite control protein A | 0.58 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | low | > 112 |
| Agrobacterium fabrum C58 | 0.22 | Atu5078 | | LacI family transcription regulator | 0.65 | Atu1359 | | dnaK deletion suppressor protein | low | > 89 |
| Paraburkholderia graminis OAS925 | 0.21 | ABIE53_002322 | | LacI family transcriptional regulator | 0.44 | ABIE53_000423 | | DnaK suppressor protein | low | > 113 |
| Pseudomonas putida KT2440 | 0.21 | PP_2457 | | DNA-binding transcriptional repressor | 0.39 | PP_4693 | | RNA polymerase-binding transcription factor DksA | low | > 96 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.21 | H281DRAFT_05228 | | transcriptional regulator, LacI family | 0.43 | H281DRAFT_02205 | | transcriptional regulator, TraR/DksA family | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c07800 | | putative transcriptional regulator, lacI family | 0.66 | PGA1_c11040 | | dnaK suppressor protein DksA | low | > 62 |
| Cupriavidus basilensis FW507-4G11 | 0.19 | RR42_RS27820 | | GntR family transcriptional regulator | 0.42 | RR42_RS01030 | | molecular chaperone DnaK | — | — |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS16795 | | LacI family DNA-binding transcriptional regulator | 0.66 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | 0.47 | 46 |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_2238 | | transcriptional regulator, LacI family (RefSeq) | 0.68 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | — | — |
| Rhodospirillum rubrum S1H | 0.18 | Rru_A1973 | | Transcriptional Regulator, LacI family (NCBI) | 0.62 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.17 | AZOBR_RS32320 | | LacI family transcriptional regulator | 0.58 | AZOBR_RS11245 | | molecular chaperone DnaK | — | — |
| Pseudomonas stutzeri RCH2 | 0.16 | Psest_2126 | | Transcriptional regulators | 0.40 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
Not shown: 16 genomes with orthologs for A4249_RS03600 only; 16 genomes with orthologs for A4249_RS08530 only