Conservation of cofitness between Shew_3289 and Shew_3131 in Shewanella loihica PV-4

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_3289 ribonuclease R (RefSeq) 1.0 Shew_3131 poly(A) polymerase (RefSeq) 0.57 2
Shewanella sp. ANA-3 0.81 Shewana3_0697 RNAse R (RefSeq) 0.69 Shewana3_3406 poly(A) polymerase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.79 SO3935 vacB ribonuclease R (NCBI ptt file) 0.70 SO0872 pcnB polyA polymerase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.74 Sama_3067 exoribonuclease II (RefSeq) 0.63 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.50 1
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_13155 ribonuclease R 0.50 CSW01_03145 polynucleotide adenylyltransferase PcnB low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.49 GFF89 Poly(A) polymerase (EC 2.7.7.19) low > 78
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3376 ribonuclease R 0.49 EX28DRAFT_3732 poly(A) polymerase low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_00460 Ribonuclease R 0.49 MPMX20_00829 Poly(A) polymerase I low > 85
Pectobacterium carotovorum WPP14 0.56 HER17_RS03835 ribonuclease R 0.49 HER17_RS05570 polynucleotide adenylyltransferase PcnB low > 75
Escherichia coli ECRC99 0.56 KEDOAH_15935 rnr ribonuclease R 0.49 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC98 0.56 JDDGAC_15860 rnr ribonuclease R 0.49 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC102 0.56 NIAGMN_10070 rnr ribonuclease R 0.49 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC101 0.56 MCAODC_02735 rnr ribonuclease R 0.49 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli Nissle 1917 0.56 ECOLIN_RS24265 ribonuclease R 0.51 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB low > 52
Escherichia fergusonii Becca 0.56 EFB2_04356 Ribonuclease R 0.49 EFB2_03901 Poly(A) polymerase I low > 86
Escherichia coli ECRC101 0.55 OKFHMN_12220 rnr ribonuclease R 0.49 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECOR27 0.55 NOLOHH_04485 rnr ribonuclease R 0.49 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03863 Ribonuclease R 0.49 OHPLBJKB_03519 Poly(A) polymerase I low > 73
Escherichia coli BL21 0.55 ECD_04046 exoribonuclease R, RNase R 0.49 ECD_00142 poly(A) polymerase low > 60
Escherichia coli ECRC62 0.55 BNILDI_07005 rnr ribonuclease R 0.49 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli BW25113 0.55 b4179 vacB putative enzyme (VIMSS) 0.51 b0143 pcnB poly(A) polymerase I (VIMSS) 0.45 2
Klebsiella michiganensis M5al 0.55 BWI76_RS02575 exoribonuclease R 0.51 BWI76_RS05005 polynucleotide adenylyltransferase 0.25 12
Escherichia coli ECOR38 0.55 HEPCGN_10450 rnr ribonuclease R 0.49 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.93 12
Pantoea sp. MT58 0.55 IAI47_02625 ribonuclease R 0.49 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.57 3
Erwinia tracheiphila SCR3 0.55 LU632_RS21750 rnr ribonuclease R 0.48 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.87 1
Dickeya dianthicola 67-19 0.54 HGI48_RS17315 ribonuclease R 0.50 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.57 20
Dickeya dadantii 3937 0.54 DDA3937_RS17260 ribonuclease R 0.50 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB low > 74
Dickeya dianthicola ME23 0.54 DZA65_RS18405 ribonuclease R 0.51 DZA65_RS17145 polynucleotide adenylyltransferase PcnB low > 75
Alteromonas macleodii MIT1002 0.50 MIT1002_03606 Ribonuclease R 0.48 MIT1002_03692 Poly(A) polymerase I precursor 0.81 4
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_0579 RNAse R 0.41 Psyr_0830 Poly(A) polymerase 0.36 31
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_0579 RNAse R 0.41 Psyr_0830 Poly(A) polymerase 0.72 1
Pseudomonas stutzeri RCH2 0.47 Psest_0691 ribonuclease R 0.40 Psest_0998 poly(A) polymerase 0.43 6
Kangiella aquimarina DSM 16071 0.47 B158DRAFT_1989 ribonuclease R 0.44 B158DRAFT_0058 poly(A) polymerase low > 40
Pseudomonas sp. S08-1 0.47 OH686_15910 ribonuclease R 0.41 OH686_17255 Poly(A) polymerase low > 80
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_08610 exoribonuclease R 0.40 AO356_16070 poly(A) polymerase 0.50 3
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R 0.41 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.71 1
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_13200 exoribonuclease R 0.40 AO353_14395 poly(A) polymerase 0.43 6
Pseudomonas sp. RS175 0.47 PFR28_05130 Ribonuclease R 0.40 PFR28_03719 Poly(A) polymerase I 0.57 1
Pseudomonas simiae WCS417 0.47 PS417_02555 exoribonuclease R 0.40 PS417_23900 poly(A) polymerase 0.58 1
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_144 3'-to-5' exoribonuclease RNase R 0.40 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.47 3
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R 0.40 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.51 4
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS02625 ribonuclease R 0.40 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.44 1
Pseudomonas fluorescens SBW25 0.46 PFLU_RS02625 ribonuclease R 0.40 PFLU_RS25740 polynucleotide adenylyltransferase PcnB low > 109
Pseudomonas putida KT2440 0.46 PP_4880 exoribonuclease R 0.40 PP_4697 poly(A) polymerase 0.45 12
Dechlorosoma suillum PS 0.44 Dsui_3128 ribonuclease R 0.35 Dsui_1515 poly(A) polymerase low > 51
Marinobacter adhaerens HP15 0.44 HP15_622 exoribonuclease R 0.42 HP15_326 polyA polymerase 0.72 2
Ralstonia solanacearum PSI07 0.42 RPSI07_RS18030 ribonuclease R 0.36 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB 0.69 12
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS10985 ribonuclease R 0.36 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB low > 80
Ralstonia solanacearum GMI1000 0.42 RS_RS06155 ribonuclease R 0.36 RS_RS13165 polynucleotide adenylyltransferase PcnB 0.80 5
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS15345 ribonuclease R 0.36 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB low > 76
Castellaniella sp019104865 MT123 0.40 ABCV34_RS06625 ribonuclease R 0.36 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB low > 48
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_06755 rnr ribonuclease R 0.41 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.90 9
Rhodanobacter denitrificans MT42 0.39 LRK55_RS00235 ribonuclease R 0.41 LRK55_RS14820 polynucleotide adenylyltransferase PcnB low > 63
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS00495 ribonuclease R 0.41 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.46 5
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS08270 ribonuclease R 0.40 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.67 1
Lysobacter sp. OAE881 0.38 ABIE51_RS07475 ribonuclease R 0.40 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB low > 62
Acidovorax sp. GW101-3H11 0.37 Ac3H11_412 3'-to-5' exoribonuclease RNase R 0.31 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4921 3'-to-5' exoribonuclease RNase R 0.31 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.73 5
Variovorax sp. OAS795 0.37 ABID97_RS17200 ribonuclease R 0.32 ABID97_RS08710 polynucleotide adenylyltransferase PcnB 0.65 45
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R 0.40 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) low > 74
Acinetobacter radioresistens SK82 0.37 MPMX26_02684 Ribonuclease R 0.27 MPMX26_00543 Poly(A) polymerase I 0.61 22

Not shown: 32 genomes with orthologs for Shew_3289 only; 0 genomes with orthologs for Shew_3131 only