Conservation of cofitness between Shew_1789 and Shew_0206 in Shewanella loihica PV-4

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_1789 cystathionine beta-lyase (RefSeq) 1.0 Shew_0206 argininosuccinate lyase (RefSeq) 0.96 18
Shewanella amazonensis SB2B 0.81 Sama_2008 cystathionine beta-lyase (RefSeq) 0.77 Sama_0260 argininosuccinate lyase (RefSeq) 0.78 45
Shewanella oneidensis MR-1 0.81 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.78 SO0279 argH argininosuccinate lyase (NCBI ptt file) 0.90 37
Shewanella sp. ANA-3 0.81 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.78 Shewana3_3901 argininosuccinate lyase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_08400 cystathionine beta-lyase 0.65 CSW01_13360 argininosuccinate lyase low > 62
Dickeya dadantii 3937 0.57 DDA3937_RS01815 cystathionine beta-lyase 0.67 DDA3937_RS20340 argininosuccinate lyase 0.84 35
Dickeya dianthicola ME23 0.57 DZA65_RS01785 cystathionine beta-lyase 0.66 DZA65_RS00945 argininosuccinate lyase 0.79 40
Dickeya dianthicola 67-19 0.57 HGI48_RS01710 cystathionine beta-lyase 0.66 HGI48_RS00885 argininosuccinate lyase 0.79 17
Pectobacterium carotovorum WPP14 0.56 HER17_RS19690 cystathionine beta-lyase 0.66 HER17_RS20620 argininosuccinate lyase low > 75
Serratia liquefaciens MT49 0.54 IAI46_21725 cystathionine beta-lyase 0.68 IAI46_24500 argininosuccinate lyase low > 86
Rahnella sp. WP5 0.54 EX31_RS08025 cystathionine beta-lyase 0.67 EX31_RS14180 argininosuccinate lyase 0.41 79
Escherichia fergusonii Becca 0.53 EFB2_00802 Cystathionine beta-lyase MetC 0.67 EFB2_04654 Argininosuccinate lyase low > 86
Escherichia coli Nissle 1917 0.53 ECOLIN_RS17315 cystathionine beta-lyase 0.67 ECOLIN_RS22855 argininosuccinate lyase low > 52
Escherichia coli BW25113 0.53 b3008 metC cystathionine beta-lyase (NCBI) 0.67 b3960 argH argininosuccinate lyase (NCBI) 0.88 40
Escherichia coli ECOR27 0.53 NOLOHH_10735 metC cystathionine beta-lyase 0.67 NOLOHH_05720 argH argininosuccinate lyase low > 57
Escherichia coli ECRC99 0.53 KEDOAH_09185 metC cystathionine beta-lyase 0.67 KEDOAH_14585 argH argininosuccinate lyase — —
Escherichia coli ECRC62 0.53 BNILDI_00780 metC cystathionine beta-lyase 0.67 BNILDI_05805 argH argininosuccinate lyase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.67 OHPLBJKB_04090 Argininosuccinate lyase low > 73
Escherichia coli ECRC101 0.53 MCAODC_09475 metC cystathionine beta-lyase 0.67 MCAODC_04075 argH argininosuccinate lyase — —
Escherichia coli ECRC98 0.53 JDDGAC_22595 metC cystathionine beta-lyase 0.67 JDDGAC_17200 argH argininosuccinate lyase — —
Escherichia coli ECRC102 0.53 NIAGMN_16725 metC cystathionine beta-lyase 0.67 NIAGMN_11325 argH argininosuccinate lyase — —
Escherichia coli ECRC101 0.53 OKFHMN_18960 metC cystathionine beta-lyase 0.67 OKFHMN_13575 argH argininosuccinate lyase — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.67 EX28DRAFT_4422 argininosuccinate lyase 0.77 26
Escherichia coli ECOR38 0.52 HEPCGN_17825 metC cystathionine beta-lyase 0.67 HEPCGN_12220 argH argininosuccinate lyase low > 85
Escherichia coli BL21 0.52 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.67 ECD_03845 argininosuccinate lyase low > 60
Enterobacter sp. TBS_079 0.52 MPMX20_03852 Cystathionine beta-lyase MetC 0.66 MPMX20_04520 Argininosuccinate lyase 0.87 37
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.67 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) low > 78
Klebsiella michiganensis M5al 0.52 BWI76_RS24285 cystathionine beta-lyase 0.68 BWI76_RS00855 argininosuccinate lyase 0.89 23
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_1388 cystathionine beta-lyase, bacterial 0.39 Ga0059261_2049 argininosuccinate lyase low > 68
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06585 cystathionine beta-lyase 0.40 AMB_RS22715 argininosuccinate lyase — —
Erwinia tracheiphila SCR3 0.49 LU632_RS20545 metC cystathionine beta-lyase 0.66 LU632_RS19600 argH argininosuccinate lyase 0.75 33
Pantoea sp. MT58 0.49 IAI47_03215 cystathionine beta-lyase 0.67 IAI47_00920 argininosuccinate lyase low > 76
Rhodopseudomonas palustris CGA009 0.48 TX73_013235 cystathionine beta-lyase 0.40 TX73_024645 argininosuccinate lyase — —
Rhodospirillum rubrum S1H 0.47 Rru_A1613 Cystathionine beta-lyase (NCBI) 0.40 Rru_A0397 Argininosuccinate lyase (NCBI) low > 58
Azospirillum brasilense Sp245 0.46 AZOBR_RS08650 cystathionine beta-lyase 0.44 AZOBR_RS16935 argininosuccinate lyase — —
Rhizobium sp. OAE497 0.45 ABIE40_RS08820 cystathionine beta-lyase 0.44 ABIE40_RS17520 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_24330 cystathionine beta-lyase 0.45 AO353_09000 argininosuccinate lyase low > 101
Sinorhizobium meliloti 1021 0.44 SMc02117 cystathionine beta-lyase 0.44 SMc00725 argininosuccinate lyase low > 103
Azospirillum sp. SherDot2 0.44 MPMX19_01339 Cystathionine beta-lyase MetC 0.44 MPMX19_05817 Argininosuccinate lyase — —
Agrobacterium fabrum C58 0.44 Atu1575 cystathionine beta lyase 0.44 Atu3599 argininosuccinate lyase — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS11250 cystathionine beta-lyase 0.42 ABZR87_RS16170 argininosuccinate lyase 0.40 5
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) 0.43 GFF736 Argininosuccinate lyase (EC 4.3.2.1) — —
Variovorax sp. OAS795 0.41 ABID97_RS22430 cystathionine beta-lyase 0.45 ABID97_RS08190 argininosuccinate lyase — —
Variovorax sp. SCN45 0.40 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.45 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) — —
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS31610 cystathionine beta-lyase 0.42 RR42_RS15925 argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0607 cystathionine beta-lyase 0.45 Psyr_0065 argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0607 cystathionine beta-lyase 0.45 Psyr_0065 argininosuccinate lyase — —
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22165 cystathionine beta-lyase 0.42 QEN71_RS24970 argininosuccinate lyase low > 153
Caulobacter crescentus NA1000 0.37 CCNA_01491 cystathionine beta-lyase 0.40 CCNA_02294 argininosuccinate lyase — —
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01491 cystathionine beta-lyase 0.40 CCNA_02294 argininosuccinate lyase — —
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS20555 cystathionine beta-lyase 0.43 RALBFv3_RS04280 argininosuccinate lyase — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS09190 cystathionine beta-lyase 0.42 BPHYT_RS05210 argininosuccinate lyase — —
Ralstonia solanacearum UW163 0.37 UW163_RS18620 cystathionine beta-lyase 0.43 UW163_RS09390 argininosuccinate lyase — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS02185 cystathionine beta-lyase 0.41 RPSI07_RS13080 argininosuccinate lyase — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00859 cystathionine beta-lyase 0.43 H281DRAFT_00194 argininosuccinate lyase low > 103
Ralstonia solanacearum GMI1000 0.35 RS_RS08260 cystathionine beta-lyase 0.41 RS_RS11865 argininosuccinate lyase — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS14995 cystathionine beta-lyase 0.43 HSERO_RS14685 argininosuccinate lyase — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.45 ABCV34_RS03060 argininosuccinate lyase — —
Bosea sp. OAE506 0.32 ABIE41_RS01480 cystathionine beta-lyase 0.43 ABIE41_RS08750 argininosuccinate lyase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS05585 cystathionine beta-lyase 0.39 A4249_RS12555 argininosuccinate lyase low > 48
Phaeobacter inhibens DSM 17395 0.27 PGA1_c16720 putative pyridoxal phosphate-dependent transferase 0.42 PGA1_c03450 argininosuccinate lyase ArgH — —
Acidovorax sp. GW101-3H11 0.25 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.45 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) — —
Acinetobacter radioresistens SK82 0.23 MPMX26_02724 Cystathionine beta-lyase 0.45 MPMX26_00185 Argininosuccinate lyase low > 36

Not shown: 0 genomes with orthologs for Shew_1789 only; 39 genomes with orthologs for Shew_0206 only