Conservation of cofitness between Shew_1789 and Shew_0204 in Shewanella loihica PV-4

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_1789 cystathionine beta-lyase (RefSeq) 1.0 Shew_0204 ornithine carbamoyltransferase (RefSeq) 0.97 10
Shewanella amazonensis SB2B 0.81 Sama_2008 cystathionine beta-lyase (RefSeq) 0.80 Sama_0258 ornithine carbamoyltransferase (RefSeq) 0.78 41
Shewanella oneidensis MR-1 0.81 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.81 SO0277 argF ornithine carbamoyltransferase (NCBI ptt file) 0.90 39
Shewanella sp. ANA-3 0.81 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.82 Shewana3_3903 ornithine carbamoyltransferase (RefSeq) 0.85 53
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_08400 cystathionine beta-lyase 0.30 CSW01_12720 ornithine carbamoyltransferase low > 62
Dickeya dadantii 3937 0.57 DDA3937_RS01815 cystathionine beta-lyase 0.31 DDA3937_RS01940 ornithine carbamoyltransferase 0.86 31
Dickeya dianthicola ME23 0.57 DZA65_RS01785 cystathionine beta-lyase 0.31 DZA65_RS01985 ornithine carbamoyltransferase 0.82 28
Dickeya dianthicola 67-19 0.57 HGI48_RS01710 cystathionine beta-lyase 0.31 HGI48_RS01915 ornithine carbamoyltransferase 0.78 20
Pectobacterium carotovorum WPP14 0.56 HER17_RS19690 cystathionine beta-lyase 0.32 HER17_RS19500 ornithine carbamoyltransferase low > 75
Rahnella sp. WP5 0.54 EX31_RS08025 cystathionine beta-lyase 0.32 EX31_RS12800 ornithine carbamoyltransferase low > 89
Serratia liquefaciens MT49 0.54 IAI46_21725 cystathionine beta-lyase 0.30 IAI46_02320 ornithine carbamoyltransferase 0.63 50
Escherichia fergusonii Becca 0.53 EFB2_00802 Cystathionine beta-lyase MetC 0.31 EFB2_04281 Ornithine carbamoyltransferase subunit I low > 86
Escherichia coli Nissle 1917 0.53 ECOLIN_RS17315 cystathionine beta-lyase 0.31 ECOLIN_RS24665 ornithine carbamoyltransferase low > 52
Escherichia coli BW25113 0.53 b3008 metC cystathionine beta-lyase (NCBI) 0.32 b4254 argI ornithine carbamoyltransferase 1 (NCBI) low > 76
Escherichia coli ECRC101 0.53 MCAODC_09475 metC cystathionine beta-lyase 0.31 MCAODC_02340 argF ornithine carbamoyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.31 OHPLBJKB_03782 Ornithine carbamoyltransferase subunit I low > 73
Escherichia coli ECRC98 0.53 JDDGAC_22595 metC cystathionine beta-lyase 0.31 JDDGAC_15475 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC99 0.53 KEDOAH_09185 metC cystathionine beta-lyase 0.31 KEDOAH_16320 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC62 0.53 BNILDI_00780 metC cystathionine beta-lyase 0.31 BNILDI_07425 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC102 0.53 NIAGMN_16725 metC cystathionine beta-lyase 0.31 NIAGMN_09685 argF ornithine carbamoyltransferase — —
Escherichia coli ECRC101 0.53 OKFHMN_18960 metC cystathionine beta-lyase 0.31 OKFHMN_11835 argF ornithine carbamoyltransferase — —
Escherichia coli ECOR27 0.53 NOLOHH_10735 metC cystathionine beta-lyase 0.31 NOLOHH_04090 argF ornithine carbamoyltransferase low > 57
Escherichia coli BL21 0.52 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.31 ECD_04120 ornithine carbamoyltransferase 1 low > 60
Escherichia coli ECOR38 0.52 HEPCGN_17825 metC cystathionine beta-lyase 0.31 HEPCGN_10025 argF ornithine carbamoyltransferase low > 85
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.31 EX28DRAFT_3461 ornithine carbamoyltransferase 0.62 53
Enterobacter sp. TBS_079 0.52 MPMX20_03852 Cystathionine beta-lyase MetC 0.30 MPMX20_00556 Ornithine carbamoyltransferase subunit F 0.82 49
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.30 GFF940 Ornithine carbamoyltransferase (EC 2.1.3.3) low > 78
Klebsiella michiganensis M5al 0.52 BWI76_RS24285 cystathionine beta-lyase 0.30 BWI76_RS03010 ornithine carbamoyltransferase 0.88 24
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_1388 cystathionine beta-lyase, bacterial 0.34 Ga0059261_3206 ornithine carbamoyltransferase low > 68
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06585 cystathionine beta-lyase 0.32 AMB_RS01610 ornithine carbamoyltransferase — —
Erwinia tracheiphila SCR3 0.49 LU632_RS20545 metC cystathionine beta-lyase 0.33 LU632_RS20900 argF ornithine carbamoyltransferase 0.67 59
Pantoea sp. MT58 0.49 IAI47_03215 cystathionine beta-lyase 0.28 IAI47_16845 ornithine carbamoyltransferase low > 76
Rhodopseudomonas palustris CGA009 0.48 TX73_013235 cystathionine beta-lyase 0.33 TX73_024805 ornithine carbamoyltransferase — —
Rhodospirillum rubrum S1H 0.47 Rru_A1613 Cystathionine beta-lyase (NCBI) 0.32 Rru_A3276 Ornithine carbamoyltransferase (NCBI) low > 58
Azospirillum brasilense Sp245 0.46 AZOBR_RS08650 cystathionine beta-lyase 0.35 AZOBR_RS19030 ornithine carbamoyltransferase — —
Rhizobium sp. OAE497 0.45 ABIE40_RS08820 cystathionine beta-lyase 0.37 ABIE40_RS02325 ornithine carbamoyltransferase low > 107
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_24330 cystathionine beta-lyase 0.33 AO353_04155 ornithine carbamoyltransferase low > 101
Sinorhizobium meliloti 1021 0.44 SMc02117 cystathionine beta-lyase 0.37 SMc02137 ornithine carbamoyltransferase 0.52 70
Azospirillum sp. SherDot2 0.44 MPMX19_01339 Cystathionine beta-lyase MetC 0.33 MPMX19_02178 Ornithine carbamoyltransferase, anabolic — —
Agrobacterium fabrum C58 0.44 Atu1575 cystathionine beta lyase 0.38 Atu0429 ornithine carbamoyltransferase — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS11250 cystathionine beta-lyase 0.34 ABZR87_RS00840 ornithine carbamoyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) 0.33 GFF3419 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Variovorax sp. OAS795 0.41 ABID97_RS22430 cystathionine beta-lyase 0.34 ABID97_RS08630 ornithine carbamoyltransferase — —
Variovorax sp. SCN45 0.40 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.33 GFF3926 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS31610 cystathionine beta-lyase 0.35 RR42_RS17175 ornithine carbamoyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0607 cystathionine beta-lyase 0.32 Psyr_3901 ornithine carbamoyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0607 cystathionine beta-lyase 0.32 Psyr_3901 ornithine carbamoyltransferase — —
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22165 cystathionine beta-lyase 0.34 QEN71_RS02785 ornithine carbamoyltransferase low > 153
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01491 cystathionine beta-lyase 0.32 CCNA_02325 ornithine carbamoyltransferase low > 67
Caulobacter crescentus NA1000 0.37 CCNA_01491 cystathionine beta-lyase 0.32 CCNA_02325 ornithine carbamoyltransferase — —
Ralstonia solanacearum UW163 0.37 UW163_RS18620 cystathionine beta-lyase 0.34 UW163_RS08440 ornithine carbamoyltransferase — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS09190 cystathionine beta-lyase 0.34 BPHYT_RS15915 ornithine carbamoyltransferase low > 109
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS20555 cystathionine beta-lyase 0.34 RALBFv3_RS05185 ornithine carbamoyltransferase — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS02185 cystathionine beta-lyase 0.34 RPSI07_RS12115 ornithine carbamoyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00859 cystathionine beta-lyase 0.35 H281DRAFT_04119 ornithine carbamoyltransferase low > 103
Ralstonia solanacearum GMI1000 0.35 RS_RS08260 cystathionine beta-lyase 0.34 RS_RS12805 ornithine carbamoyltransferase — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS14995 cystathionine beta-lyase 0.32 HSERO_RS07185 Ornithine carbamoyltransferase (EC 2.1.3.3) (from data) — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.33 ABCV34_RS05380 ornithine carbamoyltransferase low > 48
Bosea sp. OAE506 0.32 ABIE41_RS01480 cystathionine beta-lyase 0.34 ABIE41_RS04335 ornithine carbamoyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS05585 cystathionine beta-lyase 0.33 A4249_RS11920 ornithine carbamoyltransferase low > 48
Phaeobacter inhibens DSM 17395 0.27 PGA1_c16720 putative pyridoxal phosphate-dependent transferase 0.32 PGA1_c24220 ornithine carbamoyltransferase ArgF low > 62
Acidovorax sp. GW101-3H11 0.25 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.34 Ac3H11_1333 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Acinetobacter radioresistens SK82 0.23 MPMX26_02724 Cystathionine beta-lyase 0.32 MPMX26_01287 Ornithine carbamoyltransferase 1, anabolic low > 36

Not shown: 0 genomes with orthologs for Shew_1789 only; 34 genomes with orthologs for Shew_0204 only