Conservation of cofitness between Dshi_1649 and Dshi_0680 in Dinoroseobacter shibae DFL-12

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dinoroseobacter shibae DFL-12 1.0 Dshi_1649 alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) (from data) 1.0 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) 0.45 14
Phaeobacter inhibens DSM 17395 0.73 PGA1_c07890 cytoplasmic trehalase (AlgA) (from data) 0.71 PGA1_c24870 phosphoribosylaminoimidazole carboxylase ATPase subunit PurK 0.35 8
Rhizobium sp. OAE497 0.63 ABIE40_RS03175 alpha-glucosidase 0.52 ABIE40_RS16070 5-(carboxyamino)imidazole ribonucleotide synthase low > 107
Sinorhizobium meliloti 1021 0.63 SMc03064 alpha-glucosidase 0.54 SMc04002 phosphoribosylaminoimidazole carboxylase ATPase subunit low > 103
Agrobacterium fabrum C58 0.62 Atu0594 alpha-glucosidase 0.51 Atu3755 phosphoribosylaminoimidazole carboxylase ATPase subunit low > 89
Shewanella amazonensis SB2B 0.51 Sama_1662 alpha amylase, catalytic region (RefSeq) 0.24 Sama_1063 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) low > 62
Shewanella loihica PV-4 0.51 Shew_1889 alpha amylase, catalytic region (RefSeq) 0.26 Shew_1249 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) 0.66 5
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_02445 amyA alpha-glucosidase 0.35 OKGIIK_03050 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Lysobacter sp. OAE881 0.51 ABIE51_RS18995 alpha-glucosidase family protein 0.39 ABIE51_RS15390 5-(carboxyamino)imidazole ribonucleotide synthase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.2057.1 Maltodextrin glucosidase (EC 3.2.1.20) 0.37 Xcc-8004.2012.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) low > 74
Rhodanobacter denitrificans MT42 0.50 LRK55_RS12785 alpha-glucosidase family protein 0.34 LRK55_RS13530 5-(carboxyamino)imidazole ribonucleotide synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS13085 alpha-glucosidase family protein 0.34 LRK54_RS13815 5-(carboxyamino)imidazole ribonucleotide synthase
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16975 alpha-glucosidase 0.34 ABZR86_RS09830 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas stutzeri RCH2 0.49 Psest_0870 Alpha-glucosidase (EC 3.2.1.20) (from data) 0.41 Psest_4068 phosphoribosylaminoimidazole carboxylase, PurK protein
Shewanella sp. ANA-3 0.49 Shewana3_2311 Alpha-glucosidase (EC 3.2.1.20) (from data) 0.24 Shewana3_3156 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) low > 73
Variovorax sp. SCN45 0.49 GFF6332 Maltodextrin glucosidase (EC 3.2.1.20) 0.37 GFF5513 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) low > 127
Shewanella oneidensis MR-1 0.48 SO2213 oligo-1,6-glucosidase (NCBI ptt file) 0.25 SO3555 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file) low > 76
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS09955 alpha-amylase family glycosyl hydrolase 0.46 A4249_RS08935 5-(carboxyamino)imidazole ribonucleotide synthase
Sphingomonas koreensis DSMZ 15582 0.45 Ga0059261_1580 Glycosidases 0.46 Ga0059261_1428 5-(carboxyamino)imidazole ribonucleotide synthase
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_02368 alpha-glucosidase 0.52 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit low > 67
Caulobacter crescentus NA1000 0.44 CCNA_02368 alpha-glucosidase 0.52 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit low > 66
Azospirillum sp. SherDot2 0.37 MPMX19_04220 Oligo-1,6-glucosidase 1 0.46 MPMX19_01418 N5-carboxyaminoimidazole ribonucleotide synthase
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS19395 alpha-amylase family glycosyl hydrolase 0.37 QEN71_RS02450 5-(carboxyamino)imidazole ribonucleotide synthase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_02777 alpha-glucosidase 0.38 H281DRAFT_04185 5-(carboxyamino)imidazole ribonucleotide synthase
Pontibacter actiniarum KMM 6156, DSM 19842 0.35 CA264_04855 alpha-amylase 0.26 CA264_12600 5-(carboxyamino)imidazole ribonucleotide synthase low > 74
Azospirillum brasilense Sp245 0.35 AZOBR_RS25735 alpha-amylase 0.51 AZOBR_RS06140 phosphoribosylaminoimidazole carboxylase
Rhodopseudomonas palustris CGA009 0.35 TX73_024730 alpha-amylase family glycosyl hydrolase 0.46 TX73_021645 5-(carboxyamino)imidazole ribonucleotide synthase
Variovorax sp. OAS795 0.33 ABID97_RS27345 alpha-amylase family glycosyl hydrolase 0.36 ABID97_RS01700 5-(carboxyamino)imidazole ribonucleotide synthase
Rhodospirillum rubrum S1H 0.32 Rru_A2294 Alpha amylase, catalytic region (NCBI) 0.50 Rru_A1051 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) low > 58
Pseudomonas sp. RS175 0.30 PFR28_01852 Oligo-1,6-glucosidase 1 0.40 PFR28_04495 N5-carboxyaminoimidazole ribonucleotide synthase
Bifidobacterium breve UCC2003 0.28 BBR_RS13250 alpha-glucosidase 0.33 BBR_RS13300 5-(carboxyamino)imidazole ribonucleotide synthase low > 34
Rahnella sp. WP5 0.27 EX31_RS10265 alpha-glucosidase 0.28 EX31_RS22620 5-(carboxyamino)imidazole ribonucleotide synthase low > 89
Serratia liquefaciens MT49 0.26 IAI46_12925 alpha-glucosidase 0.28 IAI46_05370 5-(carboxyamino)imidazole ribonucleotide synthase low > 86
Pseudomonas fluorescens SBW25 0.25 PFLU_RS24710 alpha,alpha-phosphotrehalase 0.37 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS24710 alpha,alpha-phosphotrehalase 0.37 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase
Pseudomonas simiae WCS417 0.24 PS417_23045 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) 0.38 PS417_28115 phosphoribosylaminoimidazole carboxylase
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_835 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) 0.37 Pf1N1B4_2028 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Klebsiella michiganensis M5al 0.24 BWI76_RS02960 glucohydrolase 0.28 BWI76_RS07065 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia fergusonii Becca 0.24 EFB2_04294 Trehalose-6-phosphate hydrolase 0.28 EFB2_03540 N5-carboxyaminoimidazole ribonucleotide synthase low > 86
Mycobacterium tuberculosis H37Rv 0.24 Rv2471 Probable alpha-glucosidase AglA (maltase) (glucoinvertase) (glucosidosucrase) (maltase-glucoamylase) (lysosomal alpha-glucosidase) (acid maltase) 0.25 Rv3276c Probable phosphoribosylaminoimidazole carboxylase ATPase subunit PurK (air carboxylase) (AIRC)
Escherichia coli Nissle 1917 0.24 ECOLIN_RS24595 alpha,alpha-phosphotrehalase 0.29 ECOLIN_RS03025 5-(carboxyamino)imidazole ribonucleotide synthase low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03796 Trehalose-6-phosphate hydrolase 0.28 OHPLBJKB_03159 N5-carboxyaminoimidazole ribonucleotide synthase low > 73
Escherichia coli BL21 0.24 ECD_04107 trehalose-6-P hydrolase 0.28 ECD_00472 N5-carboxyaminoimidazole ribonucleotide synthase low > 60
Escherichia coli ECOR38 0.24 HEPCGN_10095 treC alpha,alpha-phosphotrehalase 0.28 HEPCGN_06480 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 85
Escherichia coli ECOR27 0.24 NOLOHH_04165 treC alpha,alpha-phosphotrehalase 0.29 NOLOHH_00830 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC62 0.24 BNILDI_07345 treC alpha,alpha-phosphotrehalase 0.28 BNILDI_22260 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli BW25113 0.24 b4239 treC trehalose-6-P hydrolase (NCBI) 0.28 b0522 purK phosphoribosylaminoimidazole carboxylase (NCBI) low > 76
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_15985 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) 0.38 AO353_09935 phosphoribosylaminoimidazole carboxylase
Escherichia coli ECRC101 0.23 MCAODC_02405 treC alpha,alpha-phosphotrehalase 0.28 MCAODC_27060 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF921 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) 0.28 GFF4438 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) low > 78
Escherichia coli ECRC99 0.23 KEDOAH_16255 treC alpha,alpha-phosphotrehalase 0.28 KEDOAH_20130 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC98 0.23 JDDGAC_15540 treC alpha,alpha-phosphotrehalase 0.28 JDDGAC_11490 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC102 0.23 NIAGMN_09750 treC alpha,alpha-phosphotrehalase 0.28 NIAGMN_05895 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Escherichia coli ECRC101 0.23 OKFHMN_11900 treC alpha,alpha-phosphotrehalase 0.28 OKFHMN_07840 purK 5-(carboxyamino)imidazole ribonucleotide synthase
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_04665 alpha,alpha-phosphotrehalase 0.30 CSW01_00260 5-(carboxyamino)imidazole ribonucleotide synthase
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_2850 Alpha-amylase (EC 3.2.1.1) (from data) 0.29 Echvi_0884 phosphoribosylaminoimidazole carboxylase, PurK protein

Not shown: 0 genomes with orthologs for Dshi_1649 only; 47 genomes with orthologs for Dshi_0680 only