Conservation of cofitness between BT1374 and BT3549 in Bacteroides thetaiotaomicron VPI-5482

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 1.0 BT3549 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) 0.74 16
Bacteroides ovatus ATCC 8483 0.97 BACOVA_00215 diaminopimelate decarboxylase 0.93 BACOVA_03358 peptidase dimerization domain protein 0.95 17
Bacteroides stercoris CC31F 0.88 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.85 HMPREF1181_RS02880 M20 family metallo-hydrolase 0.98 5
Phocaeicola vulgatus CL09T03C04 0.85 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.78 HMPREF1058_RS12780 M20 family metallo-hydrolase low > 67
Phocaeicola dorei CL03T12C01 0.84 ABI39_RS19950 diaminopimelate decarboxylase 0.79 ABI39_RS07790 M20 family metallo-hydrolase 0.63 32
Parabacteroides merdae CL09T00C40 0.67 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.65 HMPREF1078_RS05835 M20 family metallo-hydrolase 0.92 56
Pontibacter actiniarum KMM 6156, DSM 19842 0.57 CA264_02390 diaminopimelate decarboxylase 0.53 CA264_06230 acetylornithine deacetylase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS10180 diaminopimelate decarboxylase 0.55 ABZR88_RS04280 M20 family metallo-hydrolase — —
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS09650 diaminopimelate decarboxylase 0.51 CA265_RS18500 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) 0.89 7
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS17930 diaminopimelate decarboxylase 0.12 BPHYT_RS11720 acetylornithine deacetylase — —
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_05606 diaminopimelate decarboxylase 0.12 H281DRAFT_04940 acetylornithine deacetylase — —
Azospirillum brasilense Sp245 0.35 AZOBR_RS16945 diaminopimelate decarboxylase 0.13 AZOBR_RS30425 acetylornithine deacetylase — —
Sinorhizobium meliloti 1021 0.35 SMc00723 diaminopimelate DAP decarboxylase 0.11 SMa1836 acetylornithine deacetylase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS28080 diaminopimelate decarboxylase 0.11 QEN71_RS22070 acetylornithine deacetylase low > 153
Paraburkholderia graminis OAS925 0.35 ABIE53_003749 diaminopimelate decarboxylase 0.12 ABIE53_001520 acetylornithine deacetylase low > 113
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS02640 diaminopimelate decarboxylase 0.13 ABZR87_RS02060 acetylornithine deacetylase low > 80
Lysobacter sp. OAE881 0.35 ABIE51_RS13675 diaminopimelate decarboxylase 0.11 ABIE51_RS06995 succinyl-diaminopimelate desuccinylase — —
Ralstonia solanacearum UW163 0.35 UW163_RS06625 diaminopimelate decarboxylase 0.12 UW163_RS07245 acetylornithine deacetylase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS10250 diaminopimelate decarboxylase 0.13 RPSI07_RS10860 acetylornithine deacetylase — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS06990 diaminopimelate decarboxylase 0.12 RALBFv3_RS06380 acetylornithine deacetylase — —
Azospirillum sp. SherDot2 0.34 MPMX19_05819 Diaminopimelate decarboxylase 0.12 MPMX19_06854 Acetylornithine deacetylase — —
Ralstonia solanacearum GMI1000 0.34 RS_RS14930 diaminopimelate decarboxylase 0.13 RS_RS08270 acetylornithine deacetylase — —
Agrobacterium fabrum C58 0.34 Atu3601 diaminopimelate decarboxylase 0.15 Atu5479 acetylornithine deacetylase — —
Rhizobium sp. OAE497 0.34 ABIE40_RS17530 diaminopimelate decarboxylase 0.14 ABIE40_RS24525 acetylornithine deacetylase low > 107
Caulobacter crescentus NA1000 0.33 CCNA_02296 diaminopimelate decarboxylase 0.10 CCNA_03746 acetylornithine deacetylase — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.10 Dshi_0012 succinyl-diaminopimelate desuccinylase (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02296 diaminopimelate decarboxylase 0.10 CCNA_03746 acetylornithine deacetylase — —
Marinobacter adhaerens HP15 0.33 HP15_247 diaminopimelate decarboxylase 0.11 HP15_3315 acetylornithine deacetylase (ArgE) — —
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.12 Ga0059261_1675 acetylornithine deacetylase (ArgE) low > 68
Pseudomonas putida KT2440 0.32 PP_5227 diaminopimelate decarboxylase 0.13 PP_3571 putative Acetylornithine deacetylase low > 96
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0182 diaminopimelate decarboxylase 0.13 Psyr_0771 acetylornithine deacetylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0182 diaminopimelate decarboxylase 0.13 Psyr_0771 acetylornithine deacetylase — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12740 diaminopimelate decarboxylase 0.12 AO356_25400 acetylornithine deacetylase — —
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.13 Pf6N2E2_1185 Acetylornithine deacetylase (EC 3.5.1.16) — —
Pseudomonas sp. RS175 0.32 PFR28_04375 Diaminopimelate decarboxylase 0.13 PFR28_02137 Acetylornithine deacetylase — —
Variovorax sp. OAS795 0.32 ABID97_RS23305 diaminopimelate decarboxylase 0.11 ABID97_RS04175 acetylornithine deacetylase — —
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_09035 diaminopimelate decarboxylase 0.12 AO353_29125 acetylornithine deacetylase — —
Pseudomonas fluorescens SBW25 0.31 PFLU_RS29265 diaminopimelate decarboxylase 0.12 PFLU_RS20950 acetylornithine deacetylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS29265 diaminopimelate decarboxylase 0.12 PFLU_RS20950 acetylornithine deacetylase — —
Pseudomonas simiae WCS417 0.31 PS417_27580 diaminopimelate decarboxylase 0.12 PS417_18910 acetylornithine deacetylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.48 Echvi_3851 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) 0.92 15
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated 0.12 B158DRAFT_1977 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases — —
Enterobacter sp. TBS_079 0.19 MPMX20_03705 Diaminopimelate decarboxylase 0.10 MPMX20_04523 Acetylornithine deacetylase 0.79 33
Escherichia coli Nissle 1917 0.19 ECOLIN_RS15930 diaminopimelate decarboxylase 0.10 ECOLIN_RS22840 acetylornithine deacetylase low > 52
Escherichia fergusonii Becca 0.19 EFB2_01045 Diaminopimelate decarboxylase 0.10 EFB2_04657 Acetylornithine deacetylase low > 86
Enterobacter asburiae PDN3 0.19 EX28DRAFT_2916 diaminopimelate decarboxylase 0.10 EX28DRAFT_4419 acetylornithine deacetylase (ArgE) 0.78 34
Escherichia coli ECRC98 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.11 JDDGAC_17215 argE acetylornithine deacetylase — —
Escherichia coli ECRC62 0.19 BNILDI_10310 lysA diaminopimelate decarboxylase 0.11 BNILDI_05790 argE acetylornithine deacetylase — —
Escherichia coli ECRC99 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.11 KEDOAH_14570 argE acetylornithine deacetylase — —
Escherichia coli ECOR38 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.11 HEPCGN_12235 argE acetylornithine deacetylase low > 85
Escherichia coli BL21 0.19 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.11 ECD_03842 acetylornithine deacetylase 0.73 12
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.11 OHPLBJKB_04093 Acetylornithine deacetylase low > 73
Escherichia coli BW25113 0.19 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.11 b3957 argE acetylornithine deacetylase (NCBI) 0.86 45
Escherichia coli ECRC102 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.11 NIAGMN_11340 argE acetylornithine deacetylase — —
Escherichia coli ECRC101 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase 0.11 MCAODC_04090 argE acetylornithine deacetylase — —
Escherichia coli ECOR27 0.19 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.11 NOLOHH_05735 argE acetylornithine deacetylase low > 57
Dickeya dianthicola ME23 0.19 DZA65_RS00505 type III PLP-dependent enzyme 0.10 DZA65_RS00930 acetylornithine deacetylase low > 75
Escherichia coli ECRC101 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.11 OKFHMN_13590 argE acetylornithine deacetylase — —
Dickeya dianthicola 67-19 0.19 HGI48_RS00505 type III PLP-dependent enzyme 0.10 HGI48_RS00870 acetylornithine deacetylase 0.58 30
Dickeya dadantii 3937 0.19 DDA3937_RS20740 type III PLP-dependent enzyme 0.10 DDA3937_RS20355 acetylornithine deacetylase low > 74
Rahnella sp. WP5 0.18 EX31_RS02420 type III PLP-dependent enzyme 0.13 EX31_RS17500 M20 family metallopeptidase low > 89
Klebsiella michiganensis M5al 0.18 BWI76_RS23360 diaminopimelate decarboxylase 0.15 BWI76_RS10270 acetylornithine deacetylase low > 92
Pectobacterium carotovorum WPP14 0.18 HER17_RS03710 diaminopimelate decarboxylase 0.10 HER17_RS20635 acetylornithine deacetylase low > 75
Serratia liquefaciens MT49 0.18 IAI46_20520 diaminopimelate decarboxylase 0.11 IAI46_02530 acetylornithine deacetylase low > 86
Mycobacterium tuberculosis H37Rv 0.17 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.13 Rv1202 Probable succinyl-diaminopimelate desuccinylase DapE — —
Pantoea sp. MT58 0.17 IAI47_03860 diaminopimelate decarboxylase 0.13 IAI47_16780 M20 family metallopeptidase low > 76

Not shown: 34 genomes with orthologs for BT1374 only; 2 genomes with orthologs for BT3549 only