Conservation of cofitness between BT3260 and BT0155 in Bacteroides thetaiotaomicron VPI-5482

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3260 DNA polymerase I (NCBI ptt file) 1.0 BT0155 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) 0.54 1
Bacteroides ovatus ATCC 8483 0.93 BACOVA_01357 DNA-directed DNA polymerase 0.90 BACOVA_01282 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase low > 94
Bacteroides stercoris CC31F 0.83 HMPREF1181_RS02070 DNA polymerase I 0.82 HMPREF1181_RS05285 tRNA 2-thiouridine(34) synthase MnmA low > 56
Phocaeicola vulgatus CL09T03C04 0.79 HMPREF1058_RS11500 DNA polymerase I 0.76 HMPREF1058_RS02880 tRNA 2-thiouridine(34) synthase MnmA low > 67
Phocaeicola dorei CL03T12C01 0.79 ABI39_RS05440 DNA polymerase I 0.77 ABI39_RS02190 tRNA 2-thiouridine(34) synthase MnmA — —
Parabacteroides merdae CL09T00C40 0.64 HMPREF1078_RS06335 DNA polymerase I 0.67 HMPREF1078_RS10900 tRNA 2-thiouridine(34) synthase MnmA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_1032 DNA polymerase I 0.26 Echvi_3454 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Dickeya dianthicola 67-19 0.37 HGI48_RS21260 DNA polymerase I 0.32 HGI48_RS11530 tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC101 0.37 MCAODC_04650 polA DNA polymerase I 0.29 MCAODC_22340 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC62 0.37 BNILDI_05250 polA DNA polymerase I 0.29 BNILDI_19065 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC101 0.37 OKFHMN_14150 polA DNA polymerase I 0.29 OKFHMN_00745 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECOR27 0.37 NOLOHH_06280 polA DNA polymerase I 0.29 NOLOHH_20900 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC98 0.37 JDDGAC_17775 polA DNA polymerase I 0.29 JDDGAC_06620 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC99 0.37 KEDOAH_14000 polA DNA polymerase I 0.29 KEDOAH_24830 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC102 0.37 NIAGMN_11905 polA DNA polymerase I 0.29 NIAGMN_24890 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli BL21 0.37 ECD_03749 5 0.29 ECD_01131 tRNA(Gln,Lys,Glu) U34 2-thiouridylase — —
Escherichia coli BW25113 0.37 b3863 polA DNA polymerase I (NCBI) 0.29 b1133 ycfB orf, hypothetical protein (VIMSS) — —
Pantoea sp. MT58 0.37 IAI47_00430 DNA polymerase I 0.28 IAI47_11915 tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia fergusonii Becca 0.37 EFB2_04753 DNA polymerase I 0.30 EFB2_02842 tRNA-specific 2-thiouridylase MnmA — —
Dickeya dianthicola ME23 0.37 DZA65_RS22235 DNA polymerase I 0.32 DZA65_RS11865 tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECOR38 0.37 HEPCGN_12785 polA DNA polymerase I 0.29 HEPCGN_24220 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_04189 DNA polymerase I 0.29 OHPLBJKB_02535 tRNA-specific 2-thiouridylase MnmA — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS22270 DNA polymerase I 0.29 ECOLIN_RS06625 tRNA 2-thiouridine(34) synthase MnmA — —
Pectobacterium carotovorum WPP14 0.37 HER17_RS21470 DNA polymerase I 0.31 HER17_RS11625 tRNA 2-thiouridine(34) synthase MnmA — —
Enterobacter asburiae PDN3 0.37 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) 0.30 EX28DRAFT_1797 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Enterobacter sp. TBS_079 0.36 MPMX20_04601 DNA polymerase I 0.30 MPMX20_01817 tRNA-specific 2-thiouridylase MnmA — —
Serratia liquefaciens MT49 0.36 IAI46_24985 DNA polymerase I 0.31 IAI46_10440 tRNA 2-thiouridine(34) synthase MnmA — —
Shewanella amazonensis SB2B 0.36 Sama_0093 DNA-directed DNA polymerase (RefSeq) 0.31 Sama_2062 mnmA tRNA-specific 2-thiouridylase MnmA (RefSeq) — —
Dickeya dadantii 3937 0.36 DDA3937_RS00105 DNA polymerase I 0.32 DDA3937_RS11485 tRNA 2-thiouridine(34) synthase MnmA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.29 GFF3418 tRNA-specific 2-thiouridylase MnmA — —
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_00560 DNA polymerase I 0.28 CSW01_05725 tRNA 2-thiouridine(34) synthase MnmA — —
Shewanella sp. ANA-3 0.36 Shewana3_4109 DNA polymerase I (RefSeq) 0.29 Shewana3_1747 mnmA tRNA-specific 2-thiouridylase MnmA (RefSeq) — —
Klebsiella michiganensis M5al 0.35 BWI76_RS00355 DNA polymerase I 0.29 BWI76_RS11315 tRNA 2-thiouridine(34) synthase MnmA — —
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) 0.30 B158DRAFT_1839 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas stutzeri RCH2 0.35 Psest_4219 DNA polymerase I 0.30 Psest_2021 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Shewanella oneidensis MR-1 0.35 SO4669 polA DNA polymerase I (NCBI ptt file) 0.30 SO2633 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) — —
Shewanella loihica PV-4 0.35 Shew_3714 DNA polymerase I (RefSeq) 0.31 Shew_1560 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) — —
Pseudomonas putida KT2440 0.34 PP_0123 DNA polymerase I, 5 0.30 PP_4014 tRNA-specific 2-thiouridylase MnmA — —
Pseudomonas sp. S08-1 0.34 OH686_12215 DNA polymerase I 0.29 OH686_00210 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS02260 DNA polymerase I 0.26 HSERO_RS03470 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas simiae WCS417 0.34 PS417_00405 DNA polymerase I 0.30 PS417_16540 tRNA 2-thiouridylase — —
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_10930 DNA polymerase I 0.30 AO353_27705 tRNA 2-thiouridylase — —
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS00395 DNA polymerase I 0.30 PFLU_RS18580 tRNA 2-thiouridine(34) synthase MnmA — —
Pseudomonas fluorescens SBW25 0.33 PFLU_RS00395 DNA polymerase I 0.30 PFLU_RS18580 tRNA 2-thiouridine(34) synthase MnmA — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) 0.30 PfGW456L13_2639 tRNA-specific 2-thiouridylase MnmA — —
Variovorax sp. SCN45 0.33 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.30 GFF4912 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_0270 DNA polymerase I 0.30 Psyr_3190 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_0270 DNA polymerase I 0.30 Psyr_3190 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) 0.30 Pf1N1B4_4048 tRNA-specific 2-thiouridylase MnmA — —
Lysobacter sp. OAE881 0.33 ABIE51_RS02010 DNA polymerase I 0.28 ABIE51_RS11510 tRNA 2-thiouridine(34) synthase MnmA low > 62
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.30 Pf6N2E2_286 tRNA-specific 2-thiouridylase MnmA — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_11465 DNA polymerase I 0.29 AO356_22110 tRNA 2-thiouridylase — —
Marinobacter adhaerens HP15 0.32 HP15_293 DNA polymerase I 0.27 HP15_2086 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS17885 DNA polymerase I 0.28 QEN71_RS26740 tRNA 2-thiouridine(34) synthase MnmA — —
Variovorax sp. OAS795 0.32 ABID97_RS09180 DNA polymerase I 0.28 ABID97_RS04415 tRNA 2-thiouridine(34) synthase MnmA — —
Pseudomonas sp. RS175 0.32 PFR28_04624 DNA polymerase I 0.30 PFR28_02619 tRNA-specific 2-thiouridylase MnmA — —
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) 0.27 Ac3H11_4372 tRNA-specific 2-thiouridylase MnmA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF5584 DNA polymerase I (EC 2.7.7.7) 0.29 GFF2600 tRNA-specific 2-thiouridylase MnmA — —
Paraburkholderia graminis OAS925 0.31 ABIE53_004852 DNA polymerase-1 0.28 ABIE53_000810 tRNA-specific 2-thiouridylase — —
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_06022 DNA polymerase I 0.28 H281DRAFT_04651 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS33610 DNA polymerase I 0.27 BPHYT_RS03360 tRNA-specific 2-thiouridylase MnmA — —
Castellaniella sp019104865 MT123 0.30 ABCV34_RS02195 DNA polymerase I 0.27 ABCV34_RS06800 tRNA 2-thiouridine(34) synthase MnmA — —
Dechlorosoma suillum PS 0.25 Dsui_0459 DNA polymerase I 0.28 Dsui_3336 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —

Not shown: 38 genomes with orthologs for BT3260 only; 0 genomes with orthologs for BT0155 only