Conservation of cofitness between BT2406 and BT0155 in Bacteroides thetaiotaomicron VPI-5482

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT2406 putative DNA repair protein (NCBI ptt file) 1.0 BT0155 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) 0.56 9
Bacteroides ovatus ATCC 8483 0.97 BACOVA_03019 DNA repair protein RadA 0.90 BACOVA_01282 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase low > 94
Bacteroides stercoris CC31F 0.94 HMPREF1181_RS00075 DNA repair protein RadA 0.82 HMPREF1181_RS05285 tRNA 2-thiouridine(34) synthase MnmA low > 56
Phocaeicola vulgatus CL09T03C04 0.90 HMPREF1058_RS14715 DNA repair protein RadA 0.76 HMPREF1058_RS02880 tRNA 2-thiouridine(34) synthase MnmA low > 67
Phocaeicola dorei CL03T12C01 0.90 ABI39_RS10420 DNA repair protein RadA 0.77 ABI39_RS02190 tRNA 2-thiouridine(34) synthase MnmA low > 72
Parabacteroides merdae CL09T00C40 0.79 HMPREF1078_RS08395 DNA repair protein RadA 0.67 HMPREF1078_RS10900 tRNA 2-thiouridine(34) synthase MnmA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.63 Echvi_1031 DNA repair protein RadA 0.26 Echvi_3454 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS12235 DNA repair protein RadA 0.27 BPHYT_RS03360 tRNA-specific 2-thiouridylase MnmA — —
Paraburkholderia graminis OAS925 0.44 ABIE53_002526 DNA repair protein RadA/Sms 0.28 ABIE53_000810 tRNA-specific 2-thiouridylase — —
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00590 DNA replication and repair protein RadA 0.28 H281DRAFT_04651 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Variovorax sp. OAS795 0.44 ABID97_RS03770 DNA repair protein RadA 0.28 ABID97_RS04415 tRNA 2-thiouridine(34) synthase MnmA — —
Variovorax sp. SCN45 0.44 GFF5087 DNA repair protein RadA 0.30 GFF4912 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS06320 DNA repair protein RadA 0.28 QEN71_RS26740 tRNA 2-thiouridine(34) synthase MnmA — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0877 DNA replication and repair protein RadA 0.30 B158DRAFT_1839 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas sp. RS175 0.43 PFR28_03792 DNA repair protein RadA 0.30 PFR28_02619 tRNA-specific 2-thiouridylase MnmA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_4275 DNA replication and repair protein RadA 0.30 Psyr_3190 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_4275 DNA replication and repair protein RadA 0.30 Psyr_3190 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS26230 DNA repair protein RadA 0.30 PFLU_RS18580 tRNA 2-thiouridine(34) synthase MnmA — —
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_5076 DNA repair protein RadA 0.30 Pf6N2E2_286 tRNA-specific 2-thiouridylase MnmA — —
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_13980 DNA repair protein RadA 0.30 AO353_27705 tRNA 2-thiouridylase — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_15680 DNA repair protein RadA 0.29 AO356_22110 tRNA 2-thiouridylase — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1442 DNA repair protein RadA 0.30 PfGW456L13_2639 tRNA-specific 2-thiouridylase MnmA — —
Pseudomonas fluorescens SBW25 0.43 PFLU_RS26230 DNA repair protein RadA 0.30 PFLU_RS18580 tRNA 2-thiouridine(34) synthase MnmA — —
Pseudomonas stutzeri RCH2 0.43 Psest_3401 DNA repair protein RadA 0.30 Psest_2021 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pseudomonas putida KT2440 0.43 PP_4644 DNA repair enzyme 0.30 PP_4014 tRNA-specific 2-thiouridylase MnmA — —
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2768 DNA repair protein RadA 0.30 Pf1N1B4_4048 tRNA-specific 2-thiouridylase MnmA — —
Pseudomonas simiae WCS417 0.43 PS417_24305 DNA repair protein RadA 0.30 PS417_16540 tRNA 2-thiouridylase — —
Pseudomonas sp. S08-1 0.43 OH686_16185 DNA repair protein RadA 0.29 OH686_00210 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Shewanella oneidensis MR-1 0.42 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.30 SO2633 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.42 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.29 Shewana3_1747 mnmA tRNA-specific 2-thiouridylase MnmA (RefSeq) — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS10745 DNA repair protein RadA 0.26 HSERO_RS03470 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Castellaniella sp019104865 MT123 0.42 ABCV34_RS02345 DNA repair protein RadA 0.27 ABCV34_RS06800 tRNA 2-thiouridine(34) synthase MnmA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF1833 DNA repair protein RadA 0.29 GFF2600 tRNA-specific 2-thiouridylase MnmA — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3371 DNA repair protein RadA 0.27 Ac3H11_4372 tRNA-specific 2-thiouridylase MnmA — —
Enterobacter sp. TBS_079 0.41 MPMX20_00694 DNA repair protein RadA 0.30 MPMX20_01817 tRNA-specific 2-thiouridylase MnmA — —
Escherichia coli BL21 0.41 ECD_04265 DNA repair protein 0.29 ECD_01131 tRNA(Gln,Lys,Glu) U34 2-thiouridylase — —
Escherichia coli Nissle 1917 0.41 ECOLIN_RS25190 DNA repair protein RadA 0.29 ECOLIN_RS06625 tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_03672 DNA repair protein RadA 0.29 OHPLBJKB_02535 tRNA-specific 2-thiouridylase MnmA — —
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3597 DNA repair protein RadA 0.30 EX28DRAFT_1797 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Escherichia fergusonii Becca 0.41 EFB2_04057 DNA repair protein RadA 0.30 EFB2_02842 tRNA-specific 2-thiouridylase MnmA — —
Escherichia coli ECRC101 0.41 OKFHMN_11195 radA DNA repair protein RadA 0.29 OKFHMN_00745 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC102 0.41 NIAGMN_09045 radA DNA repair protein RadA 0.29 NIAGMN_24890 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC99 0.41 KEDOAH_16960 radA DNA repair protein RadA 0.29 KEDOAH_24830 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC62 0.41 BNILDI_08075 radA DNA repair protein RadA 0.29 BNILDI_19065 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC101 0.41 MCAODC_01710 radA DNA repair protein RadA 0.29 MCAODC_22340 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Lysobacter sp. OAE881 0.41 ABIE51_RS07685 DNA repair protein RadA 0.28 ABIE51_RS11510 tRNA 2-thiouridine(34) synthase MnmA low > 62
Escherichia coli ECRC98 0.41 JDDGAC_14790 radA DNA repair protein RadA 0.29 JDDGAC_06620 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECOR27 0.41 NOLOHH_03520 radA DNA repair protein RadA 0.29 NOLOHH_20900 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF1057 DNA repair protein RadA 0.29 GFF3418 tRNA-specific 2-thiouridylase MnmA — —
Pantoea sp. MT58 0.41 IAI47_16345 DNA repair protein RadA 0.28 IAI47_11915 tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECOR38 0.41 HEPCGN_09195 radA DNA repair protein RadA 0.29 HEPCGN_24220 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli BW25113 0.41 b4389 radA predicted repair protein (NCBI) 0.29 b1133 ycfB orf, hypothetical protein (VIMSS) — —
Serratia liquefaciens MT49 0.40 IAI46_02945 DNA repair protein RadA 0.31 IAI46_10440 tRNA 2-thiouridine(34) synthase MnmA — —
Shewanella amazonensis SB2B 0.40 Sama_0981 DNA repair protein RadA (RefSeq) 0.31 Sama_2062 mnmA tRNA-specific 2-thiouridylase MnmA (RefSeq) — —
Klebsiella michiganensis M5al 0.40 BWI76_RS04165 DNA repair protein RadA 0.29 BWI76_RS11315 tRNA 2-thiouridine(34) synthase MnmA — —
Dechlorosoma suillum PS 0.40 Dsui_2413 DNA repair protein RadA 0.28 Dsui_3336 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Pectobacterium carotovorum WPP14 0.39 HER17_RS19085 DNA repair protein RadA 0.31 HER17_RS11625 tRNA 2-thiouridine(34) synthase MnmA — —
Marinobacter adhaerens HP15 0.39 HP15_487 DNA repair protein RadA 0.27 HP15_2086 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_11870 DNA repair protein RadA 0.28 CSW01_05725 tRNA 2-thiouridine(34) synthase MnmA — —
Dickeya dianthicola ME23 0.39 DZA65_RS02485 DNA repair protein RadA 0.32 DZA65_RS11865 tRNA 2-thiouridine(34) synthase MnmA low > 75
Dickeya dianthicola 67-19 0.39 HGI48_RS02380 DNA repair protein RadA 0.32 HGI48_RS11530 tRNA 2-thiouridine(34) synthase MnmA low > 71
Dickeya dadantii 3937 0.39 DDA3937_RS02420 DNA repair protein RadA 0.32 DDA3937_RS11485 tRNA 2-thiouridine(34) synthase MnmA — —
Shewanella loihica PV-4 0.30 Shew_2807 DNA repair protein RadA (RefSeq) 0.31 Shew_1560 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) — —

Not shown: 39 genomes with orthologs for BT2406 only; 0 genomes with orthologs for BT0155 only