Conservation of cofitness between SO0873 and SO4634 in Shewanella oneidensis MR-1

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 1.0 SO4634 envZ osmolarity sensor protein EnvZ (NCBI ptt file) 0.30 11
Shewanella sp. ANA-3 0.90 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.96 Shewana3_4018 envZ osmolarity sensor protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.68 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) 0.74 Sama_3511 envZ osmolarity sensor protein (RefSeq) 0.26 41
Shewanella loihica PV-4 0.65 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.79 Shew_3638 envZ osmolarity sensor protein (RefSeq) low > 60
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.40 EX28DRAFT_4139 Signal transduction histidine kinase low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.40 MPMX20_04291 Osmolarity sensor protein EnvZ low > 85
Escherichia coli BL21 0.50 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.40 ECD_03256 sensory histidine kinase in two-component regulatory system with OmpR low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.41 OHPLBJKB_00299 Osmolarity sensor protein EnvZ low > 73
Escherichia coli ECOR27 0.50 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 NOLOHH_08830 envZ two-component system sensor histidine kinase EnvZ low > 75
Escherichia coli BW25113 0.50 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.41 b3404 envZ osmolarity sensor protein (NCBI) low > 76
Escherichia coli ECRC98 0.50 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 JDDGAC_20670 envZ two-component system sensor histidine kinase EnvZ low > 86
Escherichia coli ECRC100 0.50 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 OKFHMN_17040 envZ two-component system sensor histidine kinase EnvZ low > 80
Escherichia coli ECRC101 0.50 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 MCAODC_07570 envZ two-component system sensor histidine kinase EnvZ low > 87
Escherichia coli ECRC99 0.50 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 KEDOAH_11100 envZ two-component system sensor histidine kinase EnvZ — —
Escherichia coli ECRC102 0.50 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 NIAGMN_14810 envZ two-component system sensor histidine kinase EnvZ — —
Escherichia coli ECRC62 0.50 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 BNILDI_02690 envZ two-component system sensor histidine kinase EnvZ low > 75
Escherichia fergusonii Becca 0.50 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.41 EFB2_00424 Osmolarity sensor protein EnvZ low > 86
Escherichia coli ECOR38 0.50 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.41 HEPCGN_15850 envZ two-component system sensor histidine kinase EnvZ low > 87
Escherichia coli Nissle 1917 0.50 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.41 ECOLIN_RS19450 two-component system sensor histidine kinase EnvZ low > 55
Klebsiella michiganensis M5al 0.49 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.40 BWI76_RS26670 two-component sensor histidine kinase low > 92
Serratia liquefaciens MT49 0.49 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.38 IAI46_23785 two-component system sensor histidine kinase EnvZ low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF88 glutamyl-Q-tRNA synthetase 0.41 GFF614 Osmolarity sensory histidine kinase EnvZ low > 78
Dickeya dianthicola 67-19 0.48 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.41 HGI48_RS19745 two-component system sensor histidine kinase EnvZ low > 71
Dickeya dianthicola ME23 0.47 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.41 DZA65_RS20835 two-component system sensor histidine kinase EnvZ low > 75
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.39 CSW01_13690 two-component system sensor histidine kinase EnvZ 0.60 44
Pectobacterium carotovorum WPP14 0.47 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.38 HER17_RS01705 two-component system sensor histidine kinase EnvZ low > 75
Rahnella sp. WP5 0.47 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.40 EX31_RS04795 two-component system sensor histidine kinase EnvZ low > 89
Dickeya dadantii 3937 0.47 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.41 DDA3937_RS19615 two-component system sensor histidine kinase EnvZ low > 74
Pantoea sp. MT58 0.47 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.41 IAI47_01825 two-component system sensor histidine kinase EnvZ low > 76
Erwinia tracheiphila SCR3 0.46 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.37 LU632_RS22935 envZ two-component system sensor histidine kinase EnvZ low > 74
Erwinia amylovora T8 0.46 OLJFJH_00770 tRNA glutamyl-Q(34) synthetase GluQRS 0.40 OLJFJH_04155 two-component system sensor histidine kinase EnvZ low > 58
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0057 glutamyl-queuosine tRNA(Asp) synthetase 0.35 B158DRAFT_0685 Signal transduction histidine kinase low > 40
Alteromonas macleodii MIT1002 0.44 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.46 MIT1002_03969 Osmolarity sensor protein EnvZ low > 70
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29995 tRNA glutamyl-Q(34) synthetase GluQRS 0.27 IKLFDK_27480 two-component system sensor histidine kinase AmgS low > 101
Pseudomonas sp. S08-1 0.42 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase 0.26 OH686_11090 Osmolarity sensory histidine kinase EnvZ low > 80
Pseudomonas putida KT2440 0.40 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 0.24 PP_0247 Osmolarity sensor protein EnvZ low > 96
Pseudomonas sp. SVBP6 0.40 COO64_RS15075 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.24 COO64_RS00695 ATP-binding protein low > 93
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.26 PfGW456L13_426 Osmolarity sensory histidine kinase EnvZ 0.33 21
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 0.27 Pf6N2E2_3904 Osmolarity sensory histidine kinase EnvZ — —
Pseudomonas sp. DMC3 0.39 GFF4033 Glutamyl-Q tRNA(Asp) synthetase 0.27 GFF4182 Osmolarity sensor protein EnvZ low > 89
Pseudomonas sp. BP01 0.39 JOY50_RS27690 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.24 JOY50_RS18345 ATP-binding protein low > 84
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.27 Pf1N1B4_1773 Osmolarity sensory histidine kinase EnvZ — —
Pseudomonas stutzeri RCH2 0.39 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase 0.25 Psest_3994 Signal transduction histidine kinase low > 67
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.27 AO353_11750 ATPase 0.38 9
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_16090 glutamyl-Q tRNA(Asp) ligase 0.27 AO356_10165 ATPase low > 104
Dechlorosoma suillum PS 0.39 Dsui_1040 glutamyl-queuosine tRNA(Asp) synthetase 0.21 Dsui_2400 signal transduction histidine kinase low > 51
Pseudomonas sp. RS175 0.39 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.27 PFR28_04869 Osmolarity sensor protein EnvZ 0.17 58
Pseudomonas simiae WCS417 0.38 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.26 PS417_01175 ATPase — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.27 PFLU_RS01285 HAMP domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.27 PFLU_RS01285 HAMP domain-containing protein low > 109
Acinetobacter radioresistens SK82 0.38 MPMX26_00176 Glutamyl-Q tRNA(Asp) synthetase 0.27 MPMX26_02839 Osmolarity sensor protein EnvZ low > 36
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.27 Psyr_0259 Osmolarity sensor protein envZ low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.27 Psyr_0259 Osmolarity sensor protein envZ — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase 0.21 BPHYT_RS28995 histidine kinase low > 109
Paraburkholderia graminis OAS925 0.34 ABIE53_001439 glutamyl-Q tRNA(Asp) synthetase 0.22 ABIE53_004378 two-component system osmolarity sensor histidine kinase EnvZ low > 113
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS 0.23 RALBFv3_RS01420 two-component sensor histidine kinase low > 76
Ralstonia solanacearum GMI1000 0.34 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS 0.23 RS_RS08300 two-component sensor histidine kinase low > 80
Ralstonia solanacearum UW163 0.34 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS 0.23 UW163_RS14730 two-component sensor histidine kinase — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS 0.23 RPSI07_RS16065 two-component sensor histidine kinase low > 81
Acidovorax sp. GW101-3H11 0.33 Ac3H11_4162 glutamyl-Q-tRNA synthetase 0.21 Ac3H11_4390 integral membrane sensor signal transduction histidine kinase low > 79
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS 0.22 ABZR87_RS13215 ATP-binding protein low > 80
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS14805 glutamyl-Q tRNA(Asp) ligase 0.21 RR42_RS07880 histidine kinase low > 128
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS 0.20 QEN71_RS25990 ATP-binding protein low > 153

Not shown: 16 genomes with orthologs for SO0873 only; 2 genomes with orthologs for SO4634 only