Conservation of cofitness between b2565 and b3822 in Escherichia coli BW25113

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2565 recO DNA repair protein RecO (NCBI) 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.38 18
Escherichia coli ECRC101 1.00 MCAODC_11950 recO DNA repair protein RecO 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC98 1.00 JDDGAC_25085 recO DNA repair protein RecO 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC99 1.00 KEDOAH_06800 recO DNA repair protein RecO 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC102 1.00 NIAGMN_19190 recO DNA repair protein RecO 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14520 DNA repair protein RecO 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ — —
Escherichia coli BL21 1.00 ECD_02459 gap repair protein 1.00 ECD_03701 ATP-dependent DNA helicase 0.66 8
Escherichia coli ECRC101 1.00 OKFHMN_21420 recO DNA repair protein RecO 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01142 DNA repair protein RecO 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ low > 73
Escherichia coli ECOR27 1.00 NOLOHH_13095 recO DNA repair protein RecO 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ low > 57
Escherichia fergusonii Becca 1.00 EFB2_01331 DNA repair protein RecO 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ low > 86
Escherichia coli ECRC62 1.00 BNILDI_11895 recO DNA repair protein RecO 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECOR38 1.00 HEPCGN_20565 recO DNA repair protein RecO 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2473 DNA recombination and repair protein RecO 0.95 GFF248 ATP-dependent DNA helicase RecQ low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS21310 DNA repair protein RecO 0.92 BWI76_RS01245 DNA helicase RecQ low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0081 DNA replication and repair protein RecO 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_03436 DNA repair protein RecO 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ low > 85
Dickeya dadantii 3937 0.81 DDA3937_RS15725 DNA repair protein RecO 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ low > 74
Pantoea sp. MT58 0.80 IAI47_04890 DNA repair protein RecO 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ low > 76
Dickeya dianthicola 67-19 0.80 HGI48_RS15810 DNA repair protein RecO 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS16890 DNA repair protein RecO 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ low > 75
Erwinia tracheiphila SCR3 0.78 LU632_RS15375 recO DNA repair protein RecO 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ low > 74
Rahnella sp. WP5 0.78 EX31_RS21845 DNA repair protein RecO 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ low > 89
Pectobacterium carotovorum WPP14 0.78 HER17_RS05825 DNA repair protein RecO 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ low > 75
Serratia liquefaciens MT49 0.76 IAI46_19540 DNA repair protein RecO 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.68 15
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_12445 DNA repair protein RecO 0.67 CSW01_01045 DNA helicase RecQ low > 62
Marinobacter adhaerens HP15 0.31 HP15_786 DNA repair protein RecO 0.44 HP15_1718 ATP-dependent DNA helicase RecQ low > 73
Pseudomonas sp. S08-1 0.29 OH686_20090 DNA repair protein RecO 0.43 OH686_20670 ATP-dependent DNA helicase RecQ low > 80
Shewanella loihica PV-4 0.29 Shew_1056 DNA repair protein RecO (RefSeq) 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.78 6
Shewanella oneidensis MR-1 0.29 SO1350 recO DNA repair protein RecO (NCBI ptt file) 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.58 2
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.27 38
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_17505 DNA repair protein RecO 0.45 AO356_04050 ATP-dependent DNA helicase RecQ low > 104
Shewanella sp. ANA-3 0.28 Shewana3_3024 DNA repair protein RecO (RefSeq) 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.72 7
Pseudomonas stutzeri RCH2 0.28 Psest_3090 DNA repair protein RecO 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.61 9
Alteromonas macleodii MIT1002 0.28 MIT1002_00790 Recombination protein O 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ low > 70
Ralstonia solanacearum GMI1000 0.28 RS_RS05275 DNA repair protein RecO 0.41 RS_RS15155 DNA helicase RecQ low > 80
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_04500 DNA repair protein RecO 0.44 AO353_18430 ATP-dependent DNA helicase RecQ low > 101
Ralstonia solanacearum PSI07 0.28 RPSI07_RS18965 DNA repair protein RecO 0.41 RPSI07_RS10025 DNA helicase RecQ low > 81
Pseudomonas putida KT2440 0.28 PP_1435 DNA repair protein RecO 0.45 PP_4516 ATP-dependent DNA 3 low > 96
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_890 DNA recombination and repair protein RecO 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas sp. RS175 0.28 PFR28_03521 DNA repair protein RecO 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ low > 88
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS14495 DNA repair protein RecO 0.41 RALBFv3_RS07220 DNA helicase RecQ low > 76
Ralstonia solanacearum UW163 0.28 UW163_RS11960 DNA repair protein RecO 0.41 UW163_RS06400 DNA helicase RecQ — —
Shewanella amazonensis SB2B 0.28 Sama_0882 DNA repair protein RecO (RefSeq) 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.68 5
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS07140 DNA repair protein RecO 0.44 ABZR86_RS19925 DNA helicase RecQ low > 74
Pseudomonas fluorescens SBW25 0.27 PFLU_RS05270 DNA repair protein RecO 0.45 PFLU_RS21920 DNA helicase RecQ low > 109
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS10215 DNA repair protein RecO 0.42 ABZR87_RS02880 DNA helicase RecQ low > 80
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS05270 DNA repair protein RecO 0.45 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas simiae WCS417 0.27 PS417_05200 DNA recombination protein RecO 0.45 PS417_19950 ATP-dependent DNA helicase RecQ low > 88
Rhodanobacter denitrificans MT42 0.27 LRK55_RS16695 DNA repair protein RecO 0.44 LRK55_RS12700 DNA helicase RecQ low > 63
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS16980 DNA repair protein RecO 0.44 LRK54_RS13000 DNA helicase RecQ low > 59
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_4838 DNA recombination and repair protein RecO 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.36 12
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_07860 recO DNA repair protein RecO 0.44 OKGIIK_02375 recQ DNA helicase RecQ low > 52
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_3949 DNA replication and repair protein RecO 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.41 8
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_3949 DNA replication and repair protein RecO 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.51 7
Lysobacter sp. OAE881 0.25 ABIE51_RS13850 DNA repair protein RecO 0.41 ABIE51_RS05145 DNA helicase RecQ low > 62
Dechlorosoma suillum PS 0.25 Dsui_2462 DNA repair protein RecO 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.54 27
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.3671.1 DNA recombination and repair protein RecO 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3348 DNA recombination and repair protein RecO 0.40 GFF1958 ATP-dependent DNA helicase RecQ low > 90
Variovorax sp. OAS795 0.16 ABID97_RS08375 DNA repair protein RecO 0.43 ABID97_RS03395 DNA helicase RecQ low > 91
Variovorax sp. SCN45 0.16 GFF3872 DNA recombination and repair protein RecO 0.40 GFF6415 ATP-dependent DNA helicase RecQ low > 127
Acidovorax sp. GW101-3H11 0.14 Ac3H11_1564 DNA recombination and repair protein RecO 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.69 6

Not shown: 2 genomes with orthologs for b2565 only; 34 genomes with orthologs for b3822 only