Conservation of cofitness between b3008 and b3771 in Escherichia coli BW25113

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3008 metC cystathionine beta-lyase (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.93 13
Escherichia coli Nissle 1917 1.00 ECOLIN_RS17315 cystathionine beta-lyase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli ECOR27 1.00 NOLOHH_10735 metC cystathionine beta-lyase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli ECRC62 1.00 BNILDI_00780 metC cystathionine beta-lyase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00693 Cystathionine beta-lyase MetC 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia fergusonii Becca 0.99 EFB2_00802 Cystathionine beta-lyase MetC 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECOR38 0.99 HEPCGN_17825 metC cystathionine beta-lyase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli ECRC98 0.99 JDDGAC_22595 metC cystathionine beta-lyase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.99 OKFHMN_18960 metC cystathionine beta-lyase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BL21 0.99 ECD_02881 cystathionine beta-lyase, PLP-dependent 1.00 ECD_03649 dihydroxyacid dehydratase low > 60
Escherichia coli ECRC102 0.99 NIAGMN_16725 metC cystathionine beta-lyase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC99 0.99 KEDOAH_09185 metC cystathionine beta-lyase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.99 MCAODC_09475 metC cystathionine beta-lyase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.90 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Klebsiella michiganensis M5al 0.88 BWI76_RS24285 cystathionine beta-lyase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.89 19
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.95 2
Enterobacter sp. TBS_079 0.87 MPMX20_03852 Cystathionine beta-lyase MetC 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.93 12
Pectobacterium carotovorum WPP14 0.78 HER17_RS19690 cystathionine beta-lyase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.96 17
Dickeya dadantii 3937 0.77 DDA3937_RS01815 cystathionine beta-lyase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase 0.88 24
Rahnella sp. WP5 0.77 EX31_RS08025 cystathionine beta-lyase 0.87 EX31_RS15005 dihydroxy-acid dehydratase 0.40 88
Dickeya dianthicola ME23 0.76 DZA65_RS01785 cystathionine beta-lyase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase 0.95 3
Dickeya dianthicola 67-19 0.76 HGI48_RS01710 cystathionine beta-lyase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Serratia liquefaciens MT49 0.76 IAI46_21725 cystathionine beta-lyase 0.90 IAI46_24345 dihydroxy-acid dehydratase low > 86
Pantoea sp. MT58 0.75 IAI47_03215 cystathionine beta-lyase 0.89 IAI47_01035 dihydroxy-acid dehydratase low > 76
Erwinia tracheiphila SCR3 0.73 LU632_RS20545 metC cystathionine beta-lyase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.93 3
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_08400 cystathionine beta-lyase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Shewanella loihica PV-4 0.53 Shew_1789 cystathionine beta-lyase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.97 8
Shewanella oneidensis MR-1 0.52 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.96 5
Shewanella sp. ANA-3 0.51 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.91 9
Shewanella amazonensis SB2B 0.50 Sama_2008 cystathionine beta-lyase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.82 16
Azospirillum brasilense Sp245 0.44 AZOBR_RS08650 cystathionine beta-lyase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_1388 cystathionine beta-lyase, bacterial 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase low > 68
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Rhodopseudomonas palustris CGA009 0.41 TX73_013235 cystathionine beta-lyase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Rhizobium sp. OAE497 0.40 ABIE40_RS08820 cystathionine beta-lyase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase low > 107
Sinorhizobium meliloti 1021 0.40 SMc02117 cystathionine beta-lyase 0.75 SMc04045 dihydroxy-acid dehydratase 0.63 24
Magnetospirillum magneticum AMB-1 0.40 AMB_RS06585 cystathionine beta-lyase 0.73 AMB_RS12770 dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.40 Rru_A1613 Cystathionine beta-lyase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) low > 58
Azospirillum sp. SherDot2 0.40 MPMX19_01339 Cystathionine beta-lyase MetC 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_24330 cystathionine beta-lyase 0.75 AO353_08345 dihydroxy-acid dehydratase low > 101
Agrobacterium fabrum C58 0.38 Atu1575 cystathionine beta lyase 0.73 Atu1918 dihydroxy-acid dehydratase — —
Caulobacter crescentus NA1000 0.37 CCNA_01491 cystathionine beta-lyase 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 66
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_01491 cystathionine beta-lyase 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS11250 cystathionine beta-lyase 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Variovorax sp. SCN45 0.36 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Variovorax sp. OAS795 0.36 ABID97_RS22430 cystathionine beta-lyase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS02185 cystathionine beta-lyase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS20555 cystathionine beta-lyase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.35 UW163_RS18620 cystathionine beta-lyase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS22165 cystathionine beta-lyase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_00859 cystathionine beta-lyase 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS09190 cystathionine beta-lyase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS07655 cystathionine beta-lyase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_0607 cystathionine beta-lyase 0.74 Psyr_0469 dihydroxyacid dehydratase low > 86
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_0607 cystathionine beta-lyase 0.74 Psyr_0469 dihydroxyacid dehydratase 0.28 59
Castellaniella sp019104865 MT123 0.33 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.72 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Ralstonia solanacearum GMI1000 0.32 RS_RS08260 cystathionine beta-lyase 0.28 RS_RS12105 dihydroxy-acid dehydratase — —
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS14995 cystathionine beta-lyase 0.74 HSERO_RS02650 dihydroxy-acid dehydratase low > 78
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS05585 cystathionine beta-lyase 0.25 A4249_RS10030 dihydroxy-acid dehydratase low > 48
Bosea sp. OAE506 0.29 ABIE41_RS01480 cystathionine beta-lyase 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Acidovorax sp. GW101-3H11 0.28 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 79
Acinetobacter radioresistens SK82 0.22 MPMX26_02724 Cystathionine beta-lyase 0.29 MPMX26_03019 Dihydroxy-acid dehydratase low > 36
Phaeobacter inhibens DSM 17395 0.21 PGA1_c16720 putative pyridoxal phosphate-dependent transferase 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD low > 62

Not shown: 0 genomes with orthologs for b3008 only; 39 genomes with orthologs for b3771 only