Conservation of cofitness between b3822 and b2565 in Escherichia coli BW25113

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b2565 recO DNA repair protein RecO (NCBI) 0.38 5
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 1.00 ECOLIN_RS14520 DNA repair protein RecO — —
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 1.00 EFB2_01331 DNA repair protein RecO low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_01142 DNA repair protein RecO low > 73
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 1.00 OKFHMN_21420 recO DNA repair protein RecO — —
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 1.00 MCAODC_11950 recO DNA repair protein RecO — —
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 1.00 NIAGMN_19190 recO DNA repair protein RecO — —
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 1.00 NOLOHH_13095 recO DNA repair protein RecO low > 57
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 1.00 HEPCGN_20565 recO DNA repair protein RecO low > 85
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 1.00 KEDOAH_06800 recO DNA repair protein RecO — —
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_11895 recO DNA repair protein RecO — —
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 1.00 JDDGAC_25085 recO DNA repair protein RecO — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_02459 gap repair protein 0.66 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.93 GFF2473 DNA recombination and repair protein RecO low > 78
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.81 MPMX20_03436 DNA repair protein RecO low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.90 EX28DRAFT_0081 DNA replication and repair protein RecO low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.90 BWI76_RS21310 DNA repair protein RecO low > 92
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.78 HER17_RS05825 DNA repair protein RecO low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.78 LU632_RS15375 recO DNA repair protein RecO low > 74
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.80 IAI47_04890 DNA repair protein RecO low > 76
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.78 EX31_RS21845 DNA repair protein RecO low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.76 IAI46_19540 DNA repair protein RecO 0.68 13
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.80 DZA65_RS16890 DNA repair protein RecO 0.55 61
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.80 HGI48_RS15810 DNA repair protein RecO low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.81 DDA3937_RS15725 DNA repair protein RecO low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.62 CSW01_12445 DNA repair protein RecO low > 62
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.29 SO1350 recO DNA repair protein RecO (NCBI ptt file) 0.58 6
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.28 Shewana3_3024 DNA repair protein RecO (RefSeq) 0.72 12
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.28 Sama_0882 DNA repair protein RecO (RefSeq) 0.68 7
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.29 Shew_1056 DNA repair protein RecO (RefSeq) 0.78 4
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.28 MIT1002_00790 Recombination protein O low > 70
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.27 PfGW456L13_4838 DNA recombination and repair protein RecO 0.36 16
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.28 PP_1435 DNA repair protein RecO low > 96
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.28 PFR28_03521 DNA repair protein RecO low > 88
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.29 AO356_17505 DNA repair protein RecO 0.20 96
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.29 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.27 32
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.28 Pf1N1B4_890 DNA recombination and repair protein RecO low > 87
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.27 PFLU_RS05270 DNA repair protein RecO 0.40 90
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.27 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.27 PS417_05200 DNA recombination protein RecO low > 88
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.27 LRK54_RS16980 DNA repair protein RecO low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.28 AO353_04500 DNA repair protein RecO low > 101
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.25 Dsui_2462 DNA repair protein RecO low > 51
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.28 Psest_3090 DNA repair protein RecO 0.61 2
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.28 ABZR86_RS07140 DNA repair protein RecO 0.31 69
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.26 Psyr_3949 DNA replication and repair protein RecO 0.41 2
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.27 LRK55_RS16695 DNA repair protein RecO low > 63
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.26 Psyr_3949 DNA replication and repair protein RecO 0.51 6
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.31 HP15_786 DNA repair protein RecO low > 73
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.27 OKGIIK_07860 recO DNA repair protein RecO low > 52
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.29 OH686_20090 DNA repair protein RecO low > 80
Variovorax sp. OAS795 0.43 ABID97_RS03395 DNA helicase RecQ 0.16 ABID97_RS08375 DNA repair protein RecO low > 91
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.24 Xcc-8004.3671.1 DNA recombination and repair protein RecO low > 74
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.27 ABZR87_RS10215 DNA repair protein RecO low > 80
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.28 UW163_RS11960 DNA repair protein RecO — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.28 RALBFv3_RS14495 DNA repair protein RecO low > 76
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.28 RS_RS05275 DNA repair protein RecO low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.28 RPSI07_RS18965 DNA repair protein RecO low > 81
Lysobacter sp. OAE881 0.41 ABIE51_RS05145 DNA helicase RecQ 0.25 ABIE51_RS13850 DNA repair protein RecO low > 62
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.14 Ac3H11_1564 DNA recombination and repair protein RecO 0.69 3
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.17 GFF3348 DNA recombination and repair protein RecO 0.41 86
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.16 GFF3872 DNA recombination and repair protein RecO low > 127

Not shown: 34 genomes with orthologs for b3822 only; 2 genomes with orthologs for b2565 only