Conservation of cofitness between b2616 and b2565 in Escherichia coli BW25113

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2616 recN recombination and repair protein (NCBI) 1.0 b2565 recO DNA repair protein RecO (NCBI) 0.49 9
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01091 DNA repair protein RecN 1.00 OHPLBJKB_01142 DNA repair protein RecO low > 73
Escherichia coli ECOR27 1.00 NOLOHH_12815 recN DNA repair protein RecN 1.00 NOLOHH_13095 recO DNA repair protein RecO low > 57
Escherichia coli ECRC62 1.00 BNILDI_11620 recN DNA repair protein RecN 1.00 BNILDI_11895 recO DNA repair protein RecO — —
Escherichia coli BL21 1.00 ECD_02504 recombination and repair protein 1.00 ECD_02459 gap repair protein low > 60
Escherichia coli ECRC99 0.99 KEDOAH_07075 recN DNA repair protein RecN 1.00 KEDOAH_06800 recO DNA repair protein RecO — —
Escherichia coli ECRC101 0.99 OKFHMN_21145 recN DNA repair protein RecN 1.00 OKFHMN_21420 recO DNA repair protein RecO — —
Escherichia coli ECRC101 0.99 MCAODC_11670 recN DNA repair protein RecN 1.00 MCAODC_11950 recO DNA repair protein RecO — —
Escherichia coli ECRC102 0.99 NIAGMN_18915 recN DNA repair protein RecN 1.00 NIAGMN_19190 recO DNA repair protein RecO — —
Escherichia coli ECOR38 0.99 HEPCGN_20265 recN DNA repair protein RecN 1.00 HEPCGN_20565 recO DNA repair protein RecO low > 85
Escherichia fergusonii Becca 0.99 EFB2_01277 DNA repair protein RecN 1.00 EFB2_01331 DNA repair protein RecO low > 86
Escherichia coli ECRC98 0.99 JDDGAC_24810 recN DNA repair protein RecN 1.00 JDDGAC_25085 recO DNA repair protein RecO — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14775 DNA repair protein RecN 1.00 ECOLIN_RS14520 DNA repair protein RecO — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4162 DNA repair protein RecN 0.93 GFF2473 DNA recombination and repair protein RecO low > 78
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2719 DNA repair protein RecN 0.90 EX28DRAFT_0081 DNA replication and repair protein RecO low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03486 DNA repair protein RecN 0.81 MPMX20_03436 DNA repair protein RecO low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS21560 DNA repair protein RecN 0.90 BWI76_RS21310 DNA repair protein RecO low > 92
Serratia liquefaciens MT49 0.77 IAI46_19635 DNA repair protein RecN 0.76 IAI46_19540 DNA repair protein RecO 0.57 3
Pantoea sp. MT58 0.77 IAI47_04810 DNA repair protein RecN 0.80 IAI47_04890 DNA repair protein RecO low > 76
Rahnella sp. WP5 0.75 EX31_RS21760 DNA repair protein RecN 0.78 EX31_RS21845 DNA repair protein RecO low > 89
Dickeya dadantii 3937 0.73 DDA3937_RS04325 DNA repair protein RecN 0.81 DDA3937_RS15725 DNA repair protein RecO low > 74
Erwinia tracheiphila SCR3 0.73 LU632_RS16985 recN DNA repair protein RecN 0.78 LU632_RS15375 recO DNA repair protein RecO low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS04320 DNA repair protein RecN 0.80 HGI48_RS15810 DNA repair protein RecO low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS04235 DNA repair protein RecN 0.80 DZA65_RS16890 DNA repair protein RecO 0.43 43
Pectobacterium carotovorum WPP14 0.72 HER17_RS17420 DNA repair protein RecN 0.78 HER17_RS05825 DNA repair protein RecO 0.63 8
Shewanella oneidensis MR-1 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.29 SO1350 recO DNA repair protein RecO (NCBI ptt file) 0.44 10
Shewanella sp. ANA-3 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.28 Shewana3_3024 DNA repair protein RecO (RefSeq) 0.72 6
Shewanella amazonensis SB2B 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.28 Sama_0882 DNA repair protein RecO (RefSeq) 0.67 7
Shewanella loihica PV-4 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.29 Shew_1056 DNA repair protein RecO (RefSeq) 0.66 4
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_04395 DNA repair protein RecN 0.62 CSW01_12445 DNA repair protein RecO low > 62
Alteromonas macleodii MIT1002 0.43 MIT1002_01443 Recombination protein N 0.28 MIT1002_00790 Recombination protein O low > 70
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5106 DNA repair protein RecN 0.27 PfGW456L13_4838 DNA recombination and repair protein RecO 0.39 11
Marinobacter adhaerens HP15 0.40 HP15_3084 DNA repair protein RecN 0.31 HP15_786 DNA repair protein RecO 0.63 18
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.28 Pf1N1B4_890 DNA recombination and repair protein RecO 0.32 12
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.29 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.66 6
Pseudomonas sp. S08-1 0.39 OH686_17050 DNA repair protein RecN 0.29 OH686_20090 DNA repair protein RecO low > 80
Pseudomonas simiae WCS417 0.39 PS417_24070 recombination and repair protein 0.27 PS417_05200 DNA recombination protein RecO 0.24 29
Pseudomonas sp. RS175 0.39 PFR28_00071 DNA repair protein RecN 0.28 PFR28_03521 DNA repair protein RecO 0.23 46
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25910 DNA repair protein RecN 0.27 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07510 DNA repair protein RecN 0.29 AO356_17505 DNA repair protein RecO 0.67 10
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25910 DNA repair protein RecN 0.27 PFLU_RS05270 DNA repair protein RecO 0.27 23
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05660 DNA repair protein RecN 0.28 AO353_04500 DNA repair protein RecO low > 101
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4197 DNA replication and repair protein RecN 0.26 Psyr_3949 DNA replication and repair protein RecO 0.30 68
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4197 DNA replication and repair protein RecN 0.26 Psyr_3949 DNA replication and repair protein RecO low > 86
Pseudomonas stutzeri RCH2 0.38 Psest_0962 DNA repair protein RecN 0.28 Psest_3090 DNA repair protein RecO 0.75 1
Pseudomonas putida KT2440 0.37 PP_4729 factor used in recombination and DNA repair 0.28 PP_1435 DNA repair protein RecO 0.12 81
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.25 B158DRAFT_2189 DNA replication and repair protein RecO 0.60 13
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.27 ABZR87_RS10215 DNA repair protein RecO low > 80
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.28 RPSI07_RS18965 DNA repair protein RecO low > 81
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.28 UW163_RS11960 DNA repair protein RecO — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.28 RALBFv3_RS14495 DNA repair protein RecO low > 76
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.28 RS_RS05275 DNA repair protein RecO low > 80
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05665 DNA repair protein RecN 0.28 ABZR86_RS07140 DNA repair protein RecO 0.67 21
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.27 OKGIIK_07860 recO DNA repair protein RecO low > 52
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.27 LRK55_RS16695 DNA repair protein RecO low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.27 LRK54_RS16980 DNA repair protein RecO low > 59
Dechlorosoma suillum PS 0.33 Dsui_3072 DNA repair protein RecN 0.25 Dsui_2462 DNA repair protein RecO 0.93 2
Acidovorax sp. GW101-3H11 0.32 Ac3H11_3460 DNA repair protein RecN 0.14 Ac3H11_1564 DNA recombination and repair protein RecO 0.28 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.17 GFF3348 DNA recombination and repair protein RecO low > 90
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.16 GFF3872 DNA recombination and repair protein RecO low > 127
Lysobacter sp. OAE881 0.31 ABIE51_RS11655 DNA repair protein RecN 0.25 ABIE51_RS13850 DNA repair protein RecO low > 62
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.24 Xcc-8004.3671.1 DNA recombination and repair protein RecO low > 74
Acinetobacter radioresistens SK82 0.29 MPMX26_00239 DNA repair protein RecN 0.18 MPMX26_02153 DNA repair protein RecO low > 36

Not shown: 37 genomes with orthologs for b2616 only; 1 genomes with orthologs for b2565 only