| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Sinorhizobium meliloti 1021 | SMa0293 | | hypothetical protein | insig. | 100 | 100 |
| | Sinorhizobium meliloti 1021 | SMa0021 | | hypothetical protein | insig. | 56 | 93 |
| o | Bosea sp. OAE506 | ABIE41_RS06885 | | response regulator | insig. | 41 | 92 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS03110 | | response regulator | insig. | 33 | 91 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS02085 | | response regulator transcription factor | insig. | 31 | 92 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3197.1 | | Histidine kinase/response regulator hybrid protein | insig. | 33 | 97 |
| | Pseudomonas putida KT2440 | PP_3833 | | Response regulator | strong | 37 | 89 |
| | Pseudomonas stutzeri RCH2 | Psest_1598 | | heavy metal response regulator | insig. | 31 | 96 |
| | Azospirillum sp. SherDot2 | MPMX19_00868 | | Sensor kinase CckA | cofit | 31 | 91 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2449 | | Response regulator receiver | sig. | 33 | 89 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2449 | | Response regulator receiver | insig. | 33 | 89 |
| | Pseudomonas sp. BP01 | JOY50_RS04055 | | response regulator | no data | 37 | 89 |
| | Azospirillum brasilense Sp245 | AZOBR_RS11105 | | histidine kinase | insig. | 30 | 92 |
| | Sinorhizobium meliloti 1021 | SMc04044 | | 2-component receiver domain-containing protein | no data | 30 | 90 |
| | Pseudomonas sp. SVBP6 | COO64_RS14375 | | response regulator | insig. | 32 | 89 |
| | Rhizobium sp. OAE497 | ABIE40_RS16330 | | response regulator CpdR1 | no data | 31 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31670 | | hypothetical protein | insig. | 29 | 88 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS01705 | | Fis family transcriptional regulator | insig. | 31 | 95 |
| | Agrobacterium fabrum C58 | Atu0114 | | two component response regulator | insig. | 32 | 92 |
| | Pseudomonas sp. DMC3 | GFF2886 | | Response regulator receiver protein CpdR | insig. | 30 | 89 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c28480 | | hybrid histidine kinase/response regulator | insig. | 33 | 78 |
| | Xanthobacter sp. DMC5 | GFF4162 | | Response regulator receiver protein CpdR | no data | 30 | 88 |
| | Pseudomonas sp. DMC3 | GFF1573 | | hypothetical protein | cofit | 29 | 90 |
| | Pseudomonas sp. SVBP6 | COO64_RS25150 | | PAS domain-containing sensor histidine kinase | insig. | 28 | 88 |
| | Escherichia coli ECRC100 | OKFHMN_12705 | | hybrid sensor histidine kinase/response regulator | cofit | 27 | 86 |
| | Escherichia coli ECRC101 | MCAODC_03215 | | hybrid sensor histidine kinase/response regulator | insig. | 27 | 86 |
| | Escherichia coli ECRC102 | NIAGMN_10550 | | hybrid sensor histidine kinase/response regulator | insig. | 27 | 86 |
| | Escherichia coli ECRC98 | JDDGAC_16340 | | hybrid sensor histidine kinase/response regulator | insig. | 27 | 86 |
| | Sphingobium sp. HT1-2 | GFF3766 | | Response regulator | cofit | 27 | 90 |
| | Escherichia coli ECRC99 | KEDOAH_15460 | | hybrid sensor histidine kinase/response regulator | no data | 27 | 86 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT0732 | | two-component system response regulator (NCBI ptt file) | no data | 26 | 89 |
| | Pseudomonas sp. BP01 | JOY50_RS13780 | | PAS domain-containing sensor histidine kinase | insig. | 24 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_06704 | | Sensor histidine kinase RcsC | insig. | 34 | 97 |
| | Bosea sp. OAE506 | ABIE41_RS08525 | | cell cycle two-component system response regulator CpdR | no data | 32 | 88 |
| | Agrobacterium fabrum C58 | Atu3883 | | chemotaxis response regulator | no data | 32 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21130 | | Fis family transcriptional regulator | insig. | 28 | 92 |
| | Azospirillum sp. SherDot2 | MPMX19_01833 | | Sensor histidine kinase RcsC | insig. | 29 | 98 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3611 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | insig. | 31 | 89 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS01370 | | hybrid sensor histidine kinase/response regulator | cofit | 29 | 89 |
| | Dechlorosoma suillum PS | Dsui_3486 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 33 | 94 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1569 | | Response regulator receiver domain | sig. | 29 | 90 |
| | Agrobacterium fabrum C58 | Atu1362 | | two component sensor kinase | no data | 27 | 93 |
| | Enterobacter sp. TBS_079 | MPMX20_00303 | | Sensor histidine kinase RcsC | sig. | 25 | 88 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1196 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | strong | 31 | 86 |
| | Rhodospirillum rubrum S1H | Rru_A3039 | | PAS/PAC Sensor Hybrid Histidine Kinase (NCBI) | strong | 28 | 94 |
| | Pseudomonas stutzeri RCH2 | Psest_0334 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 33 | 88 |
| | Pseudomonas sp. BP01 | JOY50_RS04940 | | response regulator | insig. | 30 | 89 |
| | Rhodopseudomonas palustris CGA009 | TX73_004670 | | response regulator | no data | 30 | 88 |
| | Rhizobium sp. OAE497 | ABIE40_RS26180 | | PAS domain S-box protein | insig. | 30 | 89 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21875 | | histidine kinase | sig. | 27 | 88 |
| | Sphingobium sp. HT1-2 | GFF4655 | | hypothetical protein | cofit | 25 | 85 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_4215 | | Response regulator receiver domain/HAMP domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | insig. | 25 | 88 |
| | Azospirillum sp. SherDot2 | MPMX19_06930 | | Sensor kinase CckA | insig. | 30 | 95 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_10620 | | hybrid sensor histidine kinase/response regulator | insig. | 30 | 78 |
| | Pseudomonas putida KT2440 | PP_3757 | | Chemotaxis protein CheY | insig. | 30 | 89 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | cofit | 29 | 94 |
| | Pseudomonas putida KT2440 | PP_5383 | | transcriptional activator protein | insig. | 28 | 96 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS05505 | | response regulator | sig. | 27 | 95 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3837 | | response regulator receiver and SARP domain protein (RefSeq) | insig. | 27 | 88 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3465 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 31 | 92 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1497 | | Heavy metal response regulator | insig. | 27 | 97 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1497 | | Heavy metal response regulator | insig. | 27 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_05885 | | Sensor histidine kinase RcsC | insig. | 27 | 92 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS01375 | | sigma-54 dependent transcriptional regulator | strong | 30 | 93 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1904.1 | | two-component system regulatory protein | insig. | 29 | 91 |
| | Azospirillum brasilense Sp245 | AZOBR_RS12670 | | hypothetical protein | strong | 29 | 94 |
| | Pseudomonas simiae WCS417 | PS417_23315 | | transcriptional regulator | insig. | 27 | 94 |
| | Rhodospirillum rubrum S1H | Rru_A3285 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 28 | 99 |
| | Azospirillum sp. SherDot2 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 26 | 92 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3795.1 | | Histidine kinase/response regulator hybrid protein | sig. | 23 | 91 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1300 | | PAS/PAC sensor hybrid histidine kinase | insig. | 25 | 89 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1300 | | PAS/PAC sensor hybrid histidine kinase | insig. | 25 | 89 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4254 | | Sensory box histidine kinase/response regulator | no data | 28 | 91 |
| | Pseudomonas sp. BP01 | JOY50_RS08590 | | heavy metal response regulator transcription factor | insig. | 27 | 96 |
| | Xanthobacter sp. DMC5 | GFF1252 | | Sensor histidine kinase RcsC | no data | 30 | 89 |
| | Pseudomonas orientalis W4I3 | QF045_RS16060 | | response regulator | no data | 29 | 89 |
| | Pseudomonas sp. BP01 | JOY50_RS10845 | | hybrid sensor histidine kinase/response regulator | insig. | 28 | 89 |
| | Rhodopseudomonas palustris CGA009 | TX73_011015 | | response regulator | insig. | 31 | 89 |
| | Paraburkholderia graminis OAS925 | ABIE53_000648 | | two-component system C4-dicarboxylate transport response regulator DctD | insig. | 28 | 94 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_23930 | | chemotaxis protein CheY | sig. | 28 | 89 |
| | Sinorhizobium meliloti 1021 | SMc00471 | | sensor histidine kinase transmembrane protein | no data | 27 | 92 |
| | Xanthobacter sp. DMC5 | GFF2901 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 30 | 90 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS02520 | | Fis family transcriptional regulator | strong | 29 | 94 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_01840 | | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein | cofit | 28 | 92 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_27630 | | chemotaxis protein CheY | insig. | 28 | 82 |
| | Pseudomonas stutzeri RCH2 | Psest_2411 | | PAS domain S-box | sig. | 27 | 95 |
| | Sinorhizobium meliloti 1021 | SM_b21200 | | two-component response regulator protein | insig. | 29 | 92 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3052 | | Response regulator | insig. | 29 | 82 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_819 | | Response regulator | sig. | 28 | 82 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS43810 | | response regulator | insig. | 32 | 95 |
| | Pseudomonas sp. DMC3 | GFF2891 | | Sensor kinase CckA | cofit | 30 | 82 |
| | Sphingobium sp. HT1-2 | GFF3118 | | Sensory box histidine kinase/response regulator | cofit | 30 | 82 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c14810 | | nitrogen assimilation regulatory protein NtrX | no data | 28 | 86 |
| | Pseudomonas segetis P6 | ACVTMO_RS00245 | | heavy metal response regulator transcription factor | insig. | 26 | 94 |
| | Variovorax sp. SCN45 | GFF649 | | no description | cofit | 26 | 91 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4855 | | Response regulator | sig. | 30 | 82 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12450 | | histidine kinase | cofit | 27 | 91 |
| | Serratia liquefaciens MT49 | IAI46_04715 | | PAS-domain containing protein | insig. | 25 | 93 |
| | Pseudomonas sp. DMC3 | GFF3411 | | Transcriptional activator protein CopR | cofit | 28 | 94 |
| | Sphingobium sp. HT1-2 | GFF4787 | | Two-component system sensor histidine kinase | cofit | 29 | 89 |