| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 100 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 100 | 100 |
| | Pseudomonas simiae WCS417 | PS417_23325 | | histidine kinase | insig. | 50 | 75 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS25130 | | GAF domain-containing protein | insig. | 50 | 75 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS25130 | | GAF domain-containing protein | sig. | 50 | 75 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 51 | 76 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 51 | 76 |
| | Pseudomonas orientalis W4I3 | QF045_RS25570 | | ATP-binding protein | cofit | 50 | 75 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04813 | | Phytochrome-like protein cph1 | cofit | 50 | 75 |
| | Pseudomonas sp. DMC3 | GFF1005 | | Phytochrome-like protein cph1 | cofit | 50 | 74 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3852 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | sig. | 49 | 75 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_09865 | | histidine kinase | sig. | 49 | 75 |
| | Pseudomonas sp. RS175 | PFR28_04918 | | Phytochrome-like protein cph1 | insig. | 50 | 74 |
| | Rhodopseudomonas palustris CGA009 | TX73_015620 | | ATP-binding protein | insig. | 33 | 75 |
| | Azospirillum sp. SherDot2 | MPMX19_04272 | | Phytochrome-like protein cph1 | insig. | 35 | 74 |
| | Pseudomonas sp. BP01 | JOY50_RS10835 | | ATP-binding protein | insig. | 34 | 75 |
| | Pseudomonas putida KT2440 | PP_2356 | | putative Phytochrome family protein | strong | 35 | 75 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03395 | | ATP-binding protein | strong | 32 | 74 |
| | Agrobacterium fabrum C58 | Atu1990 | | bacteriophytochrome protein | insig. | 33 | 74 |
| | Pseudomonas stutzeri RCH2 | Psest_4345 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 34 | 75 |
| | Rhodopseudomonas palustris CGA009 | TX73_015615 | | ATP-binding protein | insig. | 32 | 74 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30860 | | sensor histidine kinase | strong | 36 | 74 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS06325 | | ATPase | strong | 34 | 75 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01748 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 35 | 75 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS14030 | | ATP-binding protein | cofit | 31 | 73 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS08760 | | histidine kinase | strong | 30 | 73 |
| | Variovorax sp. SCN45 | GFF651 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 32 | 77 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS10565 | | ATP-binding protein | cofit | 32 | 74 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12460 | | light-regulated signal transduction histidine kinase | insig. | 33 | 74 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS28065 | bphP;inference=COORDINATES | bacteriophytochrome BphP | insig. | 31 | 74 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_21205 | | bacteriophytochrome BphP | insig. | 32 | 74 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS47575 | bphP;inference=COORDINATES | bacteriophytochrome BphP | insig. | 31 | 74 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS02225 | | ATP-binding protein | strong | 31 | 73 |
| | Alteromonas macleodii MIT1002 | MIT1002_03619 | | Phytochrome-like protein cph1 | insig. | 29 | 74 |
| | Rhodopseudomonas palustris CGA009 | TX73_000630 | | ATP-binding protein | insig. | 31 | 74 |
| | Alteromonas macleodii MIT1002 | MIT1002_02965 | | Phytochrome-like protein cph1 | insig. | 27 | 74 |
| | Variovorax sp. SCN45 | GFF1412 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 29 | 74 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_05925 | | hypothetical protein | cofit | 27 | 74 |
| | Sphingobium sp. HT1-2 | GFF650 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 33 | 53 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30160 | | chemotaxis protein CheY | insig. | 29 | 68 |
| | Agrobacterium fabrum C58 | Atu2165 | | bacteriophytochrome protein | insig. | 32 | 54 |
| | Bosea sp. OAE506 | ABIE41_RS08275 | | HWE histidine kinase domain-containing protein | insig. | 33 | 54 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS15480 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 31 | 59 |
| | Sphingobium sp. HT1-2 | GFF5140 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 32 | 55 |
| | Azospirillum sp. SherDot2 | MPMX19_01598 | | hypothetical protein | insig. | 32 | 54 |
| | Rhizobium sp. OAE497 | ABIE40_RS14515 | | HWE histidine kinase domain-containing protein | insig. | 33 | 55 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_08315 | | PAS sensor protein | sig. | 31 | 50 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c28680 | | putative bacteriophytochrome | insig. | 29 | 66 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.5288.1 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 33 | 54 |
| | Pseudomonas sp. BP01 | JOY50_RS14150 | | HWE histidine kinase domain-containing protein | insig. | 33 | 54 |
| | Pseudomonas putida KT2440 | PP_3364 | | Response regulator | insig. | 32 | 54 |
| | Xanthobacter sp. DMC5 | GFF4286 | | Phytochrome-like protein cph1 | insig. | 33 | 54 |
| | Rhizobium sp. OAE497 | ABIE40_RS26950 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 31 | 72 |
| | Rhodopseudomonas palustris CGA009 | TX73_005095 | | HWE histidine kinase domain-containing protein | insig. | 32 | 54 |
| | Rhodospirillum rubrum S1H | Rru_A2235 | | Multi-sensor Signal Transduction Histidine Kinase (NCBI) | strong | 33 | 53 |
| | Lysobacter sp. OAE881 | ABIE51_RS17880 | | GAF domain-containing protein | insig. | 33 | 52 |
| | Rhodopseudomonas palustris CGA009 | TX73_007660 | | GAF domain-containing protein | cofit | 30 | 51 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16825 | | hypothetical protein | insig. | 31 | 51 |
| | Caulobacter crescentus NA1000 | CCNA_03272 | | two-component sensor histidine kinase | insig. | 47 | 18 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03272 | | two-component sensor histidine kinase | insig. | 47 | 18 |
| | Methanococcus maripaludis S2 | MMP_RS06715 | | cache domain-containing protein | strong | 35 | 23 |
| | Methanococcus maripaludis JJ | MMJJ_RS07640 | | cache domain-containing protein | strong | 33 | 25 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS06580 | | HWE histidine kinase domain-containing protein | strong | 42 | 19 |
| | Paraburkholderia graminis OAS925 | ABIE53_001093 | | PAS domain S-box-containing protein | insig. | 39 | 19 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06575 | | PAS domain S-box-containing protein | insig. | 39 | 20 |
| | Pseudomonas sp. RS175 | PFR28_02308 | | hypothetical protein | insig. | 41 | 19 |
| | Lysobacter sp. OAE881 | ABIE51_RS09855 | | HWE histidine kinase domain-containing protein | insig. | 37 | 22 |
| | Caulobacter crescentus NA1000 | CCNA_00879 | | PAS-family sensor histidine kinase | insig. | 39 | 22 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00879 | | PAS-family sensor histidine kinase | cofit | 39 | 22 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1458.1 | | Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) | insig. | 37 | 22 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1503 | | Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) | insig. | 42 | 20 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00090 | | histidine kinase | insig. | 36 | 25 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01480 | | Protein-glutamate O-methyltransferase | insig. | 42 | 19 |
| | Sinorhizobium meliloti 1021 | SMa0113 | | Sensor histidine kinase | cofit | 38 | 20 |
| | Sinorhizobium meliloti 1021 | SM_b20933 | | two-component sensor histidine kinase | insig. | 38 | 22 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_23970 | | histidine kinase | insig. | 40 | 20 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS01570 | | hypothetical protein | insig. | 30 | 24 |
| | Bosea sp. OAE506 | ABIE41_RS01160 | | PAS domain-containing protein | insig. | 35 | 20 |
| | Caulobacter crescentus NA1000 | CCNA_00665 | | GAF-family sensor histidine kinase | insig. | 35 | 21 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00665 | | GAF-family sensor histidine kinase | insig. | 35 | 21 |
| | Caulobacter crescentus NA1000 | CCNA_03003 | | two component sensor histidine kinase | insig. | 42 | 20 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03003 | | two component sensor histidine kinase | cofit | 42 | 20 |
| | Lysobacter sp. OAE881 | ABIE51_RS02715 | | chemotaxis protein CheB | insig. | 38 | 19 |
| | Sphingobium sp. HT1-2 | GFF2215 | | Two-component system sensor histidine kinase | cofit | 40 | 20 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12465 | | histidine kinase | insig. | 35 | 24 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS08215 | | PAS domain-containing protein | cofit | 31 | 22 |
| | Variovorax sp. OAS795 | ABID97_RS12030 | | CheR family methyltransferase | insig. | 35 | 23 |
| | Rhodopseudomonas palustris CGA009 | TX73_014435 | | HWE histidine kinase domain-containing protein | insig. | 37 | 20 |
| | Dechlorosoma suillum PS | Dsui_0776 | | PAS domain S-box | cofit | 34 | 24 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21460 | | PAS domain-containing protein | cofit | 33 | 23 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS10160 | | two-component sensor histidine kinase | cofit | 34 | 24 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1183 | | two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) | sig. | 32 | 25 |
| | Rhizobium sp. OAE497 | ABIE40_RS24610 | | sensor histidine kinase KdpD | insig. | 35 | 26 |
| | Azospirillum brasilense Sp245 | AZOBR_RS14215 | | histidine kinase | insig. | 33 | 24 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS15510 | | ATP-binding protein | cofit | 34 | 23 |
| | Agrobacterium fabrum C58 | Atu1988 | | two component sensor kinase | insig. | 32 | 23 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1131 | | response regulator receiver sensor signal transduction histidine kinase (RefSeq) | cofit | 32 | 28 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05614 | | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein | insig. | 29 | 24 |
| | Bosea sp. OAE506 | ABIE41_RS09570 | | HWE histidine kinase domain-containing protein | insig. | 36 | 21 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2420 | | Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) | insig. | 34 | 24 |