| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF7429 | | Integrase/recombinase, RitB | no data | 100 | 100 |
| o | Variovorax sp. OAS795 | ABID97_RS18465 | | tyrosine-type recombinase/integrase | insig. | 88 | 100 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS39865 | | tyrosine-type recombinase/integrase | insig. | 40 | 98 |
| | Sinorhizobium meliloti 1021 | SMa1619 | | integrase/recombinase | no data | 40 | 97 |
| o | Sinorhizobium meliloti 1021 | SMa2187 | | Integrase/recombinase | no data | 40 | 97 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3697 | | integrase family protein (RefSeq) | no data | 35 | 98 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_4005 | | integrase family protein (RefSeq) | no data | 35 | 98 |
| o | Rhizobium sp. OAE497 | ABIE40_RS29770 | | tyrosine-type recombinase/integrase | insig. | 36 | 94 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS42890 | | tyrosine-type recombinase/integrase | insig. | 44 | 65 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44395 | | tyrosine-type recombinase/integrase | insig. | 30 | 95 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS42355 | | tyrosine-type recombinase/integrase | insig. | 36 | 65 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS01130 | | hypothetical protein | insig. | 33 | 74 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS40120 | | tyrosine-type recombinase/integrase | insig. | 30 | 98 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44190 | | tyrosine-type recombinase/integrase | no data | 32 | 77 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44480 | | tyrosine-type recombinase/integrase | no data | 32 | 77 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44355 | | tyrosine-type recombinase/integrase | insig. | 31 | 98 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0027 | | Site-specific recombinase XerD | no data | 27 | 96 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2548 | | Site-specific recombinase XerD | no data | 27 | 96 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4349 | | Site-specific recombinase XerD | no data | 27 | 96 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44550 | | tyrosine-type recombinase/integrase | insig. | 38 | 50 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44615 | | tyrosine-type recombinase/integrase | insig. | 36 | 58 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_01050 | | site-specific recombinase, phage integrase family/ribosomal subunit interface protein | insig. | 30 | 52 |
| | Dechlorosoma suillum PS | Dsui_1217 | | tyrosine recombinase XerD | cofit | 29 | 77 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19035 | | integrase | no data | 30 | 58 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2742 | | integrase, site-specific recombinase (NCBI ptt file) | insig. | 29 | 55 |
| | Sinorhizobium meliloti 1021 | SMc00691 | | site-specific tyrosine recombinase XerD | sig. | 28 | 97 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS10220 | | site-specific tyrosine recombinase XerD | insig. | 27 | 73 |
| | Rhodospirillum rubrum S1H | Rru_A3738 | | Phage integrase (NCBI) | no data | 31 | 84 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2635 | | putative integrase/recombinase (NCBI ptt file) | insig. | 39 | 26 |
| | Bifidobacterium breve UCC2003 | BBR_RS11760 | | integrase | insig. | 40 | 24 |
| | Dickeya dianthicola 67-19 | HGI48_RS20045 | | tyrosine recombinase XerC | strong | 27 | 91 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS17800 | | tyrosine-type recombinase/integrase | insig. | 27 | 66 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1809 | | tyrosine recombinase XerD | insig. | 27 | 84 |
| | Dickeya dadantii 3937 | DDA3937_RS19890 | | tyrosine recombinase XerC | no data | 27 | 91 |
| | Dickeya dianthicola ME23 | DZA65_RS21090 | | tyrosine recombinase XerC | insig. | 27 | 91 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS12160 | | site-specific tyrosine recombinase XerD | insig. | 30 | 76 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS01135 | | integrase | insig. | 28 | 79 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1286 | | tyrosine recombinase XerD subunit | sig. | 28 | 81 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1286 | | tyrosine recombinase XerD subunit | sig. | 28 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1611 | | integrase family protein (RefSeq) | strong | 29 | 85 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS09445 | | tyrosine-type recombinase/integrase | sig. | 27 | 79 |
| | Mycobacterium tuberculosis H37Rv | Rv1701 | | Probable integrase/recombinase | sig. | 31 | 73 |
| | Pseudomonas segetis P6 | ACVTMO_RS07795 | xerD | site-specific tyrosine recombinase XerD | strong | 31 | 74 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS19880 | | site-specific tyrosine recombinase XerD | cofit | 28 | 90 |
| | Rhizobium sp. OAE497 | ABIE40_RS17685 | | site-specific tyrosine recombinase XerD | sig. | 30 | 77 |
| | Pseudomonas sp. SVBP6 | COO64_RS04910 | xerD | site-specific tyrosine recombinase XerD | sig. | 29 | 74 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS14280 | xerD;go_function=site-specific | site-specific tyrosine recombinase XerD | insig. | 31 | 71 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19085 | | site-specific tyrosine recombinase XerD | no data | 31 | 71 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS42845 | xerD;go_function=site-specific | site-specific tyrosine recombinase XerD | insig. | 31 | 71 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS00625 | | tyrosine recombinase XerC | cofit | 29 | 54 |
| | Variovorax sp. OAS795 | ABID97_RS20265 | | site-specific tyrosine recombinase XerD | insig. | 28 | 87 |
| | Variovorax sp. SCN45 | GFF2772 | | Site-specific tyrosine recombinase XerD | strong | 27 | 88 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS05140 | | site-specific tyrosine recombinase XerD | insig. | 28 | 77 |
| | Ralstonia solanacearum UW163 | UW163_RS08485 | | site-specific tyrosine recombinase XerD | insig. | 28 | 77 |
| | Ralstonia solanacearum GMI1000 | RS_RS12755 | | tyrosine recombinase XerD | no data | 29 | 76 |
| | Bifidobacterium breve UCC2003 | BBR_RS16755 | | site-specific tyrosine recombinase XerD | strong | 29 | 76 |
| | Pseudomonas orientalis W4I3 | QF045_RS25085 | | site-specific tyrosine recombinase XerD | cofit | 29 | 74 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04729 | | Tyrosine recombinase XerD | cofit | 28 | 74 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00850 | | site-specific tyrosine recombinase XerD | no data | 24 | 90 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | sig. | 29 | 74 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | strong | 29 | 74 |
| | Pseudomonas simiae WCS417 | PS417_22895 | | tyrosine recombinase XerD | strong | 29 | 74 |
| | Azospirillum brasilense Sp245 | AZOBR_RS03240 | | recombinase XerD | insig. | 28 | 80 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS04265 | | tyrosine recombinase XerD | insig. | 30 | 64 |
| | Alteromonas macleodii MIT1002 | MIT1002_00786 | | Tyrosine recombinase XerD | insig. | 27 | 74 |
| | Escherichia coli ECRC62 | BNILDI_04985 | xerC | tyrosine recombinase XerC | insig. | 26 | 93 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0342 | | integron integrase | insig. | 27 | 64 |
| | Escherichia coli ECOR27 | NOLOHH_06550 | xerC | tyrosine recombinase XerC | insig. | 26 | 93 |
| | Escherichia coli ECOR38 | HEPCGN_13125 | xerC | tyrosine recombinase XerC | cofit | 26 | 93 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04239 | | Tyrosine recombinase XerC | insig. | 26 | 93 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS21875 | | tyrosine recombinase XerC | strong | 26 | 93 |
| | Escherichia coli BW25113 | b3811 | xerC | site-specific tyrosine recombinase XerC (NCBI) | strong | 26 | 93 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2066 | xerC | site-specific recombinase, phage integrase family (TIGR) | sig. | 33 | 54 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_04365 | | recombinase XerD | strong | 28 | 78 |
| | Escherichia coli BL21 | ECD_03687 | | site-specific tyrosine recombinase | sig. | 26 | 93 |
| | Shewanella loihica PV-4 | Shew_0770 | | tyrosine recombinase XerD (RefSeq) | strong | 29 | 73 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1721 | | Tyrosine recombinase XerD | strong | 28 | 74 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3270 | | Site-specific recombinase XerD | insig. | 28 | 60 |
| | Escherichia fergusonii Becca | EFB2_04826 | | Tyrosine recombinase XerC | strong | 26 | 93 |
| | Pseudomonas sp. S08-1 | OH686_17750 | | tyrosine recombinase XerD | insig. | 30 | 76 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS03835 | | tyrosine-type recombinase/integrase | no data | 25 | 84 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS04705 | | site-specific tyrosine recombinase XerD | strong | 25 | 84 |
| | Escherichia coli ECRC100 | OKFHMN_14420 | xerC | tyrosine recombinase XerC | insig. | 25 | 93 |
| | Escherichia coli ECRC101 | MCAODC_04925 | xerC | tyrosine recombinase XerC | no data | 25 | 93 |
| | Escherichia coli ECRC102 | NIAGMN_12175 | xerC | tyrosine recombinase XerC | no data | 25 | 93 |
| | Escherichia coli ECRC98 | JDDGAC_18045 | xerC | tyrosine recombinase XerC | no data | 25 | 93 |
| | Escherichia coli ECRC99 | KEDOAH_13730 | xerC | tyrosine recombinase XerC | no data | 25 | 93 |
| | Klebsiella michiganensis M5al | BWI76_RS23545 | | tyrosine recombinase | insig. | 27 | 59 |
| | Pseudomonas sp. BP01 | JOY50_RS11700 | xerD | site-specific tyrosine recombinase XerD | insig. | 27 | 74 |
| | Pseudomonas putida KT2440 | PP_1468 | | Tyrosine recombinase XerD | strong | 27 | 74 |
| | Rhodopseudomonas palustris CGA009 | TX73_002625 | | site-specific tyrosine recombinase XerD | sig. | 30 | 76 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_06385 | | recombinase XerD | strong | 29 | 71 |
| | Pseudomonas sp. DMC3 | GFF1987 | | Tyrosine recombinase XerD | insig. | 28 | 74 |
| | Pseudomonas sp. RS175 | PFR28_00331 | | Tyrosine recombinase XerD | strong | 27 | 74 |
| | Pseudomonas stutzeri RCH2 | Psest_3129 | | tyrosine recombinase XerD | insig. | 29 | 74 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3011 | | Tyrosine recombinase XerD | insig. | 28 | 74 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02123 | | tyrosine recombinase XerD | strong | 23 | 83 |
| | Sphingobium sp. HT1-2 | GFF251 | | Site-specific tyrosine recombinase XerC | cofit | 32 | 73 |
| | Klebsiella michiganensis M5al | BWI76_RS23550 | | tyrosine recombinase | insig. | 29 | 52 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_2265 | | tyrosine recombinase XerD | strong | 25 | 84 |