Homologs of GFF5162 from Sphingobium sp. HT1-2

RNA polymerase, sigma-24 subunit, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF5162 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 100 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02400 RNA polymerase sigma factor cofit 37 91
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS09540 sigma-70 family RNA polymerase sigma factor no data 38 87
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 38 97
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 38 89
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 41 90
o Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 36 93
o Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 35 99
o Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 34 97
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 33 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 38 85
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 34 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 36 85
o Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 38 85
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 33 97
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 33 97
  Sphingobium sp. HT1-2 GFF4091 hypothetical protein cofit 34 91
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 30 92
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 33 89
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 33 91
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 34 87
  Azospirillum brasilense Sp245 AZOBR_RS30810 RNA polymerase sigma70 insig. 34 90
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 35 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 35 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3412 FIG006045: Sigma factor, ECF subfamily insig. 32 95
o Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 37 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 32 87
o Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 34 89
o Xanthobacter sp. DMC5 GFF2424 putative RNA polymerase sigma factor FecI insig. 33 94
  Sphingobium sp. HT1-2 GFF2039 RNA polymerase ECF-type sigma factor cofit 32 93
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 34 87
  Pseudomonas sp. SVBP6 COO64_RS18805 sigma-70 family RNA polymerase sigma factor insig. 35 87
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3924 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 strong 28 98
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 32 97
o Rahnella sp. WP5 EX31_RS16485 sigma-70 family RNA polymerase sigma factor insig. 31 91
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 35 90
o Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 35 97
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 34 85
  Pseudomonas aeruginosa PA14 IKLFDK_11700 pyoverdine signaling pathway sigma factor FpvI sig. 37 89
  Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 35 91
  Pseudomonas putida KT2440 PP_2192 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein insig. 32 97
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 32 91
  Pseudomonas sp. BP01 JOY50_RS19220 RNA polymerase sigma factor insig. 28 96
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0778 RNA polymerase sigma factor, sigma-70 family insig. 33 97
  Pseudomonas sp. BP01 JOY50_RS15495 RNA polymerase sigma factor insig. 31 94
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 29 99
  Lysobacter sp. OAE881 ABIE51_RS06950 RNA polymerase sigma factor strong 33 90
  Pseudomonas fluorescens FW300-N2C3 AO356_07625 RNA polymerase subunit sigma insig. 31 95
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma insig. 36 92
  Pseudomonas aeruginosa PA14 IKLFDK_24795 RNA polymerase sigma factor insig. 34 86
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 34 87
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 33 96
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 31 91
  Agrobacterium fabrum C58 Atu3387 sigma factor insig. 31 91
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0612 RNA polymerase sigma factor, sigma-70 family insig. 34 93
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 33 91
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 31 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 31 89
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 31 97
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 31 95
  Pseudomonas sp. BP01 JOY50_RS11380 RNA polymerase sigma factor insig. 32 89
  Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 32 89
  Rhodospirillum rubrum S1H Rru_A2397 Sigma-24 (FecI) (NCBI) insig. 31 90
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 29 97
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 33 87
o Bacteroides thetaiotaomicron VPI-5482 BT2198 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 93
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 30 94
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 32 89
  Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 94
  Dechlorosoma suillum PS Dsui_0961 RNA polymerase sigma factor, SigZ family insig. 33 81
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 29 97
  Pseudomonas sp. SVBP6 COO64_RS16360 RNA polymerase sigma factor sig. 31 89
o Variovorax sp. OAS795 ABID97_RS24815 sigma-70 family RNA polymerase sigma factor insig. 31 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02700 RNA polymerase sigma-70 factor insig. 28 82
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 35 81
  Herbaspirillum seropedicae SmR1 HSERO_RS12165 RNA polymerase sigma factor insig. 33 90
  Pseudomonas sp. SVBP6 COO64_RS16380 RNA polymerase sigma factor insig. 32 85
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 31 89
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3549 RNA polymerase sigma factor, sigma-70 family insig. 29 94
  Pectobacterium carotovorum WPP14 HER17_RS18100 sigma-70 family RNA polymerase sigma factor cofit 30 94
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 32 82
  Pseudomonas sp. DMC3 GFF2767 putative RNA polymerase sigma factor FecI insig. 31 94
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 28 93
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 28 93
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 35 81
  Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 32 89
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 31 84
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 32 82
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 35 74
  Pseudomonas sp. SVBP6 COO64_RS04525 RNA polymerase sigma factor insig. 31 91
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 31 90
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 33 82
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 31 90
  Pseudomonas sp. SVBP6 COO64_RS15350 sigma-70 family RNA polymerase sigma factor insig. 30 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05630 RNA polymerase sigma-70 factor sig. 27 93
  Pseudomonas sp. SVBP6 COO64_RS03795 RNA polymerase sigma factor insig. 32 98
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_604 FIG006045: Sigma factor, ECF subfamily insig. 31 89
  Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 29 94
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 29 94
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein insig. 29 93