| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas simiae WCS417 | PS417_26050 | | response regulator | sig. | 100 | 100 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS27690 | | response regulator | no data | 93 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS27690 | | response regulator | insig. | 93 | 100 |
| o | Pseudomonas orientalis W4I3 | QF045_RS00455 | | response regulator | insig. | 93 | 99 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05330 | | Regulatory protein AtoC | insig. | 91 | 100 |
| o | Pseudomonas sp. RS175 | PFR28_04111 | | Regulatory protein AtoC | no data | 78 | 99 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4751 | | response regulator | insig. | 79 | 99 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_14095 | | response regulator | no data | 78 | 99 |
| o | Pseudomonas sp. DMC3 | GFF84 | | Regulatory protein AtoC | no data | 77 | 99 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2477 | | response regulator | insig. | 77 | 99 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_07565 | | response regulator | no data | 78 | 99 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1138 | | response regulator | insig. | 76 | 99 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_4701 | | Response regulator receiver | no data | 66 | 99 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4701 | | Response regulator receiver | no data | 66 | 99 |
| o | Pseudomonas sp. SVBP6 | COO64_RS22765 | | response regulator | insig. | 58 | 99 |
| o | Pseudomonas sp. BP01 | JOY50_RS17895 | | response regulator | insig. | 52 | 97 |
| | Pseudomonas putida KT2440 | PP_0355 | | Response regulator | sig. | 50 | 97 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS03200 | | response regulator | insig. | 47 | 76 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS03200 | | response regulator | insig. | 47 | 76 |
| | Pseudomonas orientalis W4I3 | QF045_RS06155 | | response regulator | insig. | 46 | 76 |
| | Pseudomonas simiae WCS417 | PS417_03120 | | histidine kinase | insig. | 47 | 74 |
| | Pseudomonas segetis P6 | ACVTMO_RS20050 | | response regulator | insig. | 44 | 78 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4388 | | Response regulator receiver | sig. | 46 | 74 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4388 | | Response regulator receiver | insig. | 46 | 74 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00464 | | two component transcriptional regulator, LuxR family | no data | 35 | 88 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS12850 | | LuxR family transcriptional regulator | no data | 35 | 88 |
| | Paraburkholderia graminis OAS925 | ABIE53_002795 | | FixJ family two-component response regulator | no data | 35 | 88 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS05715 | | oxygen response regulator transcription factor FixJ | no data | 35 | 88 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2073 | cheY-2 | chemotaxis protein CheY (TIGR) | strong | 34 | 80 |
| | Pseudomonas sp. DMC3 | GFF3346 | | Regulator of RpoS | cofit | 47 | 74 |
| | Pseudomonas sp. DMC3 | GFF3335 | | Response regulator protein TmoT | cofit | 34 | 78 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0775 | | response regulator receiver protein (RefSeq) | sig. | 33 | 80 |
| | Dechlorosoma suillum PS | Dsui_2360 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 37 | 80 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c13440 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | no data | 31 | 80 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1282 | | DNA-binding response regulator, LuxR family | insig. | 31 | 78 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS02245 | | response regulator | cofit | 39 | 70 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c20690 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 36 | 80 |
| | Pseudomonas sp. BP01 | JOY50_RS23205 | | response regulator transcription factor | insig. | 36 | 78 |
| | Pseudomonas segetis P6 | ACVTMO_RS19995 | | response regulator transcription factor | insig. | 31 | 78 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1273 | | Response regulator | insig. | 45 | 57 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_18255 | | hypothetical protein | insig. | 35 | 81 |
| | Agrobacterium fabrum C58 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | strong | 33 | 78 |
| | Pseudomonas putida KT2440 | PP_0574 | | DNA-binding response regulator, LuxR family | strong | 34 | 78 |
| | Pectobacterium carotovorum WPP14 | HER17_RS05925 | | two-component system response regulator GlrR | cofit | 34 | 80 |
| | Dechlorosoma suillum PS | Dsui_1758 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 32 | 77 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS17425 | | hybrid sensor histidine kinase/response regulator | insig. | 42 | 64 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_28370 | | two-component system response regulator QseF/GlrR | insig. | 35 | 78 |
| | Serratia liquefaciens MT49 | IAI46_19460 | | two-component system response regulator GlrR | sig. | 35 | 78 |
| | Enterobacter sp. TBS_079 | MPMX20_03423 | | Transcriptional regulatory protein QseF | sig. | 34 | 78 |
| | Klebsiella michiganensis M5al | BWI76_RS21250 | | two-component system response regulator GlrR | sig. | 34 | 78 |
| | Xanthobacter sp. DMC5 | GFF4524 | | Regulator of RpoS | insig. | 32 | 95 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1081 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | strong | 31 | 78 |
| | Pseudomonas stutzeri RCH2 | Psest_2710 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | no data | 37 | 81 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS13795 | | response regulator | insig. | 35 | 82 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | sig. | 34 | 78 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4376 | | regulatory protein, LuxR:Response regulator receiver | insig. | 31 | 80 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4376 | | regulatory protein, LuxR:Response regulator receiver | insig. | 31 | 80 |
| | Pantoea sp. MT58 | IAI47_04945 | | two-component system response regulator GlrR | sig. | 36 | 76 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS03150 | | response regulator transcription factor | insig. | 31 | 78 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS03150 | | response regulator transcription factor | sig. | 31 | 78 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_22510 | | DNA-binding response regulator | insig. | 31 | 76 |
| | Pseudomonas orientalis W4I3 | QF045_RS06105 | | response regulator transcription factor | cofit | 31 | 78 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS14835 | | two-component system response regulator GlrR | cofit | 36 | 76 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30925 | | transcriptional regulator | no data | 36 | 76 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5122 | | Type IV fimbriae expression regulatory protein PilR | insig. | 35 | 77 |
| | Paraburkholderia graminis OAS925 | ABIE53_001365 | | DNA-binding NtrC family response regulator | strong | 33 | 77 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2455 | | Putative sensory histidine kinase YfhA | strong | 33 | 78 |
| | Rhodospirillum rubrum S1H | Rru_A1385 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | cofit | 33 | 81 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS01705 | | Fis family transcriptional regulator | insig. | 32 | 79 |
| | Pseudomonas sp. BP01 | JOY50_RS03145 | | response regulator | insig. | 36 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_00268 | | Transcriptional regulatory protein OmpR | insig. | 35 | 76 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF610 | | Putative sensory histidine kinase YfhA | insig. | 32 | 85 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS03060 | | SpoIIE family protein phosphatase | no data | 36 | 78 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS32530 | rssB;go_process=phosphorelay | two-component system response regulator RssB | no data | 36 | 78 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_14160 | | fused response regulator/phosphatase | no data | 36 | 78 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2818 | | Type IV fimbriae expression regulatory protein PilR | insig. | 32 | 82 |
| | Enterobacter sp. TBS_079 | MPMX20_00303 | | Sensor histidine kinase RcsC | sig. | 38 | 77 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_4215 | | Response regulator receiver domain/HAMP domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | insig. | 37 | 77 |
| | Pantoea sp. MT58 | IAI47_20285 | | response regulator | insig. | 37 | 80 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_14200 | | transcriptional regulator | insig. | 34 | 78 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS00340 | | XRE family transcriptional regulator | no data | 33 | 81 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4019 | | Sigma-54 dependent transcriptional regulator | sig. | 32 | 80 |
| | Pseudomonas putida KT2440 | PP_3429 | | Response regulator/sensor histidine kinase | sig. | 31 | 80 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_00320 | | chemotaxis protein CheY | no data | 35 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2568 | | two component transcriptional regulator, LuxR family (RefSeq) | cofit | 34 | 88 |
| | Serratia liquefaciens MT49 | IAI46_24960 | | nitrogen regulation protein NR(I) | strong | 33 | 81 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS25025 | pprB;inference=COORDINATES | two-component response regulator PprB | sig. | 31 | 81 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_02630 | | two-component response regulator PprB | insig. | 31 | 81 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS57480 | pprB;inference=COORDINATES | two-component response regulator PprB | sig. | 31 | 81 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2307 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | insig. | 31 | 76 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3228 | cheY-3 | chemotaxis protein CheY (TIGR) | sig. | 27 | 84 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_15905 | | transcriptional regulator | insig. | 35 | 77 |
| | Lysobacter sp. OAE881 | ABIE51_RS04850 | | sigma-54 dependent transcriptional regulator | strong | 34 | 78 |
| | Dickeya dadantii 3937 | DDA3937_RS15640 | | two-component system response regulator GlrR | cofit | 34 | 78 |
| | Pseudomonas sp. DMC3 | GFF4000 | | Regulatory protein AtoC | cofit | 33 | 78 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS07635 | | transcriptional regulator | insig. | 32 | 81 |
| | Azospirillum sp. SherDot2 | MPMX19_01261 | | Regulator of RpoS | insig. | 31 | 76 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_02930 | qseF | two-component system response regulator QseF/GlrR | cofit | 37 | 70 |
| | Erwinia tracheiphila SCR3 | LU632_RS17930 | glrR | two-component system response regulator GlrR | insig. | 37 | 70 |
| | Rhodospirillum rubrum S1H | Rru_A2837 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 36 | 76 |