| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Xanthobacter sp. DMC5 | GFF4419 | | hypothetical protein | insig. | 100 | 100 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS14305 | | chemotaxis protein CheY | insig. | 46 | 91 |
| | Cellulophaga baltica 18 | M666_RS08335 | | response regulator transcription factor | sig. | 29 | 74 |
| | Klebsiella michiganensis M5al | BWI76_RS04215 | | DNA-binding response regulator | insig. | 33 | 84 |
| | Escherichia coli ECOR27 | NOLOHH_03470 | creB | two-component system response regulator CreB | insig. | 32 | 81 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_03663 | | Transcriptional regulatory protein CreB | insig. | 32 | 81 |
| | Escherichia coli BL21 | ECD_04274 | | response regulator in two-component regulatory system with CreC | insig. | 31 | 81 |
| | Escherichia fergusonii Becca | EFB2_04046 | | Transcriptional regulatory protein CreB | insig. | 31 | 81 |
| | Escherichia coli ECOR38 | HEPCGN_09145 | creB | two-component system response regulator CreB | insig. | 31 | 81 |
| | Escherichia coli ECRC100 | OKFHMN_11140 | creB | two-component system response regulator CreB | insig. | 31 | 81 |
| | Escherichia coli ECRC101 | MCAODC_01655 | creB | two-component system response regulator CreB | insig. | 31 | 81 |
| | Escherichia coli ECRC102 | NIAGMN_08990 | creB | two-component system response regulator CreB | insig. | 31 | 81 |
| | Escherichia coli ECRC62 | BNILDI_08130 | creB | two-component system response regulator CreB | insig. | 31 | 81 |
| | Escherichia coli ECRC98 | JDDGAC_14735 | creB | two-component system response regulator CreB | insig. | 31 | 81 |
| | Escherichia coli ECRC99 | KEDOAH_17015 | creB | two-component system response regulator CreB | no data | 31 | 81 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS25240 | | two-component system response regulator CreB | insig. | 31 | 81 |
| | Escherichia coli BW25113 | b4398 | creB | DNA-binding response regulator in two-component regulatory system with CreC (NCBI) | sig. | 31 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0038 | | two component transcriptional regulator, winged helix family (RefSeq) | no data | 31 | 73 |
| | Variovorax sp. SCN45 | GFF4727 | | Two-component transcriptional response regulator, LuxR family | insig. | 29 | 69 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS15680 | | chemotaxis protein CheY | strong | 29 | 79 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_12480 | | two-component system response regulator CreB | insig. | 28 | 84 |
| | Marinobacter adhaerens HP15 | HP15_3810 | | response regulator receiver protein | insig. | 32 | 83 |
| | Lysobacter sp. OAE881 | ABIE51_RS10325 | | response regulator transcription factor | insig. | 26 | 75 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_02815 | | transcriptional regulator | strong | 32 | 83 |
| | Pectobacterium carotovorum WPP14 | HER17_RS07440 | | response regulator transcription factor | cofit | 31 | 56 |
| | Acinetobacter baumannii LAC-4 | RR41_RS00990 | | response regulator transcription factor | insig. | 26 | 69 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04264 | | Sigma-54 interaction domain protein | insig. | 26 | 84 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS11790 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 26 | 79 |
| | Xanthobacter sp. DMC5 | GFF483 | | Sensor histidine kinase RcsC | insig. | 27 | 84 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS15800 | | sigma-54-dependent Fis family transcriptional regulator | strong | 26 | 79 |
| | Methylophilus sp. DMC18 | GFF2304 | | Regulatory protein AtoC | cofit | 36 | 40 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c20200 | | two-component signal transduction system, response regulator | strong | 31 | 80 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS13275 | | response regulator | cofit | 29 | 81 |
| | Rhodopseudomonas palustris CGA009 | TX73_001475 | | response regulator transcription factor | no data | 27 | 73 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_3608 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | insig. | 31 | 83 |
| | Bifidobacterium breve UCC2003 | BBR_RS15990 | | DNA-binding response regulator | sig. | 31 | 72 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c33330 | | transcriptional regulatory protein | no data | 30 | 72 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1066 | | Two-component response regulator CreB | sig. | 34 | 51 |
| | Enterobacter sp. TBS_079 | MPMX20_00705 | | Transcriptional regulatory protein CreB | insig. | 33 | 77 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS22890 | | response regulator transcription factor | insig. | 30 | 84 |
| | Marinobacter adhaerens HP15 | HP15_1053 | | two component transcriptional regulator, LuxR family | sig. | 28 | 83 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4576 | | FOG: CheY-like receiver | sig. | 25 | 74 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1969 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 43 | 39 |
| | Methylophilus sp. DMC18 | GFF1131 | | Transcriptional regulatory protein OmpR | insig. | 29 | 70 |
| | Pseudomonas sp. BP01 | JOY50_RS08135 | | response regulator | insig. | 28 | 81 |
| | Escherichia coli ECRC100 | OKFHMN_00730 | phoP | two-component system response regulator PhoP | cofit | 27 | 88 |
| | Escherichia coli ECRC101 | MCAODC_22355 | phoP | two-component system response regulator PhoP | strong | 27 | 88 |
| | Escherichia coli ECRC102 | NIAGMN_24875 | phoP | two-component system response regulator PhoP | cofit | 27 | 88 |
| | Escherichia coli ECRC98 | JDDGAC_06635 | phoP | two-component system response regulator PhoP | sig. | 27 | 88 |
| | Escherichia coli ECRC99 | KEDOAH_24815 | phoP | two-component system response regulator PhoP | no data | 27 | 88 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1529 | | two-component system response regulator (NCBI ptt file) | strong | 26 | 79 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS17415 | | response regulator transcription factor | insig. | 26 | 65 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0823 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | insig. | 30 | 85 |
| | Ralstonia solanacearum GMI1000 | RS_RS24590 | | DNA-binding response regulator | insig. | 30 | 84 |
| | Variovorax sp. SCN45 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | no data | 28 | 77 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0895 | | phosphate regulon transcriptional regulatory protein PhoB | cofit | 26 | 83 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4188 | | Response regulator of zinc sigma-54-dependent two-component system | insig. | 35 | 57 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04215 | | response regulator receiver domain protein | insig. | 31 | 84 |
| | Pseudomonas segetis P6 | MPMX49_00302 | | Alginate biosynthesis transcriptional regulatory protein AlgB | insig. | 30 | 75 |
| | Escherichia coli BL21 | ECD_01128 | | response regulator in two-component regulatory system with PhoQ | no data | 27 | 88 |
| | Escherichia fergusonii Becca | EFB2_02845 | | Transcriptional regulatory protein PhoP | strong | 27 | 88 |
| | Escherichia coli ECOR27 | NOLOHH_20915 | phoP | two-component system response regulator PhoP | insig. | 27 | 88 |
| | Escherichia coli ECOR38 | HEPCGN_24200 | phoP | two-component system response regulator PhoP | strong | 27 | 88 |
| | Escherichia coli ECRC62 | BNILDI_19080 | phoP | two-component system response regulator PhoP | strong | 27 | 88 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS06610 | | two-component system response regulator PhoP | no data | 27 | 88 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5269 | | Nitrogen regulation protein NR(I) | insig. | 26 | 79 |
| | Acinetobacter radioresistens SK82 | MPMX26_03174 | | Transcriptional regulatory protein QseB | insig. | 25 | 52 |
| | Enterobacter sp. TBS_079 | MPMX20_01190 | | Swarming motility regulation protein RssB | insig. | 31 | 56 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1482 | | two-component system response regulator (NCBI ptt file) | insig. | 31 | 84 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS01750 | | sigma-54 dependent transcriptional regulator | strong | 29 | 87 |
| | Pseudomonas simiae WCS417 | PS417_00450 | | chemotaxis protein CheY | strong | 29 | 82 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0556 | srrB | two component transcriptional regulator, winged helix family | strong | 27 | 81 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02538 | | Transcriptional regulatory protein PhoP | sig. | 27 | 88 |
| | Escherichia coli BW25113 | b1130 | phoP | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | strong | 27 | 88 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS02485 | | hypothetical protein | insig. | 22 | 82 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_584 | | alginate biosynthesis transcriptional regulatory protein AlgB | sig. | 28 | 76 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_26000 | | sigma-54-dependent response regulator transcription factor AlgB | insig. | 28 | 76 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1885 | | alginate biosynthesis transcriptional regulatory protein AlgB | sig. | 28 | 76 |
| | Pseudomonas simiae WCS417 | PS417_17470 | | LuxR family transcriptional regulator | insig. | 28 | 77 |
| | Pseudomonas sp. S08-1 | OH686_12145 | | Alginate biosynthesis two-component system response regulator AlgB | cofit | 28 | 75 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0263 | | Two-component response regulator AlgB | sig. | 28 | 77 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0263 | | Two-component response regulator AlgB | sig. | 28 | 77 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS30345 | | XRE family transcriptional regulator | insig. | 31 | 56 |
| | Pseudomonas simiae WCS417 | PS417_21515 | | transcriptional regulator | strong | 30 | 83 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3483 | | Transcriptional regulatory protein PhoP | strong | 29 | 83 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS08050 | | DNA-binding response regulator | insig. | 28 | 88 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37545 | | response regulator | insig. | 28 | 82 |
| | Pseudomonas putida KT2440 | PP_0133 | | Alginate biosynthesis transcriptional regulatory protein AlgB | sig. | 28 | 77 |
| | Variovorax sp. OAS795 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | cofit | 27 | 77 |
| | Dechlorosoma suillum PS | Dsui_2485 | | response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain | insig. | 27 | 72 |
| | Variovorax sp. SCN45 | GFF3032 | | Two-component transcriptional response regulator, LuxR family | insig. | 38 | 40 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_26325 | | two-component system response regulator BaeR | insig. | 36 | 51 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS16415 | | DNA-binding response regulator | cofit | 35 | 54 |
| | Ralstonia solanacearum UW163 | UW163_RS17155 | | DNA-binding response regulator | insig. | 35 | 54 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_10980 | | chemotaxis protein CheY | insig. | 27 | 76 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS06400 | | DNA-binding response regulator | strong | 26 | 88 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04447 | | Virulence transcriptional regulatory protein PhoP | cofit | 30 | 83 |
| | Ralstonia solanacearum GMI1000 | RS_RS14035 | | sigma-54-dependent Fis family transcriptional regulator | strong | 30 | 87 |
| | Pseudomonas sp. SVBP6 | COO64_RS02525 | algB | sigma-54-dependent response regulator transcription factor AlgB | insig. | 28 | 76 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS12850 | | LuxR family transcriptional regulator | no data | 28 | 87 |