| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Xanthobacter sp. DMC5 | GFF4306 | | hypothetical protein | insig. | 100 | 100 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS30580 | | ATP-binding protein | insig. | 42 | 84 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS03370 | | ATP-binding protein | insig. | 32 | 29 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS13915 | | ATPase | sig. | 31 | 32 |
| | Paraburkholderia graminis OAS925 | ABIE53_000512 | | SpoVK/Ycf46/Vps4 family AAA+-type ATPase | sig. | 28 | 30 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS05830 | | ATP-binding protein | insig. | 29 | 35 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS06085 | | ATP-binding protein | insig. | 29 | 35 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09615 | | ATP-binding protein | insig. | 28 | 28 |
| | Dickeya dianthicola ME23 | DZA65_RS10440 | | ATP-binding protein | insig. | 30 | 24 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2455 | | AAA ATPase central domain protein (RefSeq) | insig. | 30 | 35 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_00540 | | AAA family ATPase | insig. | 29 | 35 |
| | Variovorax sp. OAS795 | ABID97_RS03385 | | AAA family ATPase | sig. | 33 | 27 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1960 | | Cell division protein FtsH (EC 3.4.24.-) | cofit | 33 | 27 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS14395 | | ATP-binding protein | insig. | 31 | 28 |
| | Pseudomonas sp. S08-1 | OH686_01155 | | ATPase, AAA family | insig. | 30 | 24 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS14835 | | ATP-binding protein | insig. | 31 | 28 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS07060 | | AAA family ATPase | insig. | 25 | 34 |
| | Ralstonia solanacearum GMI1000 | RS_RS09860 | | ATP-binding protein | insig. | 28 | 43 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2559 | | AAA ATPase central domain protein (RefSeq) | sig. | 28 | 35 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS02485 | | ATP-binding protein | insig. | 35 | 21 |
| | Ralstonia solanacearum UW163 | UW163_RS11240 | | ATP-binding protein | insig. | 35 | 21 |
| | Variovorax sp. SCN45 | GFF6421 | | ATPase, AAA family | cofit | 32 | 25 |
| | Dechlorosoma suillum PS | Dsui_2646 | | AAA+ family ATPase | no data | 30 | 27 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3580 | | ATPases of the AAA+ class | insig. | 29 | 24 |
| | Alteromonas macleodii MIT1002 | MIT1002_03220 | | ATP-dependent zinc metalloprotease FtsH | insig. | 35 | 20 |
| | Marinobacter adhaerens HP15 | HP15_1744 | | AAA ATPase central domain protein | insig. | 29 | 23 |
| | Pseudomonas sp. DMC3 | GFF4126 | | ATP-dependent zinc metalloprotease FtsH | cofit | 28 | 36 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS02020 | | ATP-binding protein | insig. | 27 | 27 |
| | Paraburkholderia graminis OAS925 | ABIE53_000155 | | SpoVK/Ycf46/Vps4 family AAA+-type ATPase | no data | 27 | 27 |
| | Rhizobium sp. OAE497 | ABIE40_RS12380 | | AAA family ATPase | insig. | 28 | 32 |
| | Methanococcus maripaludis S2 | MMP_RS00150 | | AAA family ATPase | sig. | 25 | 30 |
| | Sphingobium sp. HT1-2 | GFF4390 | | AAA-family ATPase, Atu6082 type | no data | 29 | 21 |
| | Pseudomonas stutzeri RCH2 | Psest_0442 | | ATPases of the AAA+ class | strong | 28 | 36 |
| | Methanococcus maripaludis JJ | MMJJ_RS05340 | | AAA family ATPase | insig. | 25 | 30 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS19185 | | ATPase | no data | 25 | 32 |
| | Shewanella oneidensis MR-1 | SO3885 | | ATPase, AAA family (NCBI ptt file) | insig. | 27 | 28 |
| | Pseudomonas stutzeri RCH2 | Psest_3081 | | ATP-dependent protease La | insig. | 25 | 41 |
| | Xanthobacter sp. DMC5 | GFF300 | | ATP-dependent zinc metalloprotease FtsH | insig. | 29 | 25 |
| | Methanococcus maripaludis JJ | MMJJ_RS04505 | | CDC48 family AAA ATPase | strong | 28 | 31 |
| | Methanococcus maripaludis S2 | MMP_RS00985 | | CDC48 family AAA ATPase | strong | 28 | 31 |
| | Marinobacter adhaerens HP15 | HP15_1355 | | cell division protein FtsH | insig. | 27 | 30 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | strong | 31 | 20 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4142 | | Cell division protein FtsH (EC 3.4.24.-) | no data | 30 | 23 |
| | Shewanella amazonensis SB2B | Sama_1774 | | recombination factor protein RarA (RefSeq) | sig. | 30 | 24 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0417 | | ATPase | strong | 28 | 23 |
| | Pseudomonas sp. SVBP6 | COO64_RS16640 | lon | endopeptidase La | insig. | 26 | 38 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS05100 | | ATPase AAA | insig. | 25 | 33 |
| | Pseudomonas simiae WCS417 | PS417_05240 | | Lon protease | strong | 30 | 17 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS08950 | | AAA family ATPase | sig. | 24 | 29 |
| | Pseudomonas sp. S08-1 | OH686_05340 | | endopeptidase La | cofit | 33 | 13 |
| | Methanococcus maripaludis JJ | MMJJ_RS05910 | | proteasome-activating nucleotidase | no data | 26 | 25 |
| | Methanococcus maripaludis S2 | MMP_RS08460 | | proteasome-activating nucleotidase | strong | 26 | 25 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS16240 | | ATP-dependent zinc metalloprotease FtsH | no data | 25 | 31 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3944 | | ATP dependent PIM1 peptidase, Serine peptidase, MEROPS family S16 | insig. | 30 | 17 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3944 | | ATP dependent PIM1 peptidase, Serine peptidase, MEROPS family S16 | insig. | 30 | 17 |
| | Shewanella loihica PV-4 | Shew_3822 | | ATPase central domain-containing protein (RefSeq) | strong | 27 | 21 |
| | Pseudomonas stutzeri RCH2 | Psest_3821 | | ATP-dependent Zn proteases | insig. | 27 | 30 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05310 | | endopeptidase La | cofit | 30 | 17 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05310 | | endopeptidase La | sig. | 30 | 17 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01254 | | Lon protease | cofit | 30 | 17 |
| | Pseudomonas orientalis W4I3 | QF045_RS08225 | | endopeptidase La | cofit | 30 | 17 |
| | Acinetobacter radioresistens SK82 | MPMX26_00772 | | ATP-dependent zinc metalloprotease FtsH | no data | 26 | 29 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS60055 | | ATP-binding protein | no data | 26 | 24 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04826 | | ATP-dependent metallopeptidase HflB | no data | 25 | 31 |
| | Pseudomonas sp. RS175 | PFR28_00322 | | Lon protease | insig. | 30 | 17 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_06430 | | Lon protease | insig. | 30 | 17 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3154 | | ATP-dependent protease La (EC 3.4.21.53) Type I | insig. | 30 | 17 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS09755 | | ATP-dependent zinc metalloprotease FtsH | no data | 25 | 31 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS14105 | | ATP-dependent zinc metalloprotease FtsH | no data | 25 | 31 |
| | Pseudomonas sp. DMC3 | GFF4313 | | Lon protease | cofit | 33 | 13 |
| | Pseudomonas putida KT2440 | PP_1443 | | DNA-binding, ATP-dependent protease | insig. | 33 | 13 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4807 | | ATP-dependent protease La (EC 3.4.21.53) Type I | sig. | 30 | 17 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS20285 | | replication-associated recombination protein A | insig. | 28 | 21 |
| | Agrobacterium fabrum C58 | Atu6082 | | AAA-family ATPase | no data | 29 | 22 |