Homologs of GFF4286 from Pseudomonas sp. DMC3

hypothetical protein
SEED: Membrane bound c-di-GMP receptor LapD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 100 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 92 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 92 100
o Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 91 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 91 100
o Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 91 100
o Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 91 100
o Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 79 100
o Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 76 100
o Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 75 100
o Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 60 100
o Pseudomonas aeruginosa PA14 IKLFDK_06810 Diguanylate cyclase/phosphodiesterase insig. 62 100
o Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 59 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 58 99
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 57 99
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 57 99
o Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 55 100
o Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 34 98
o Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 27 100
o Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 32 96
o Methylophilus sp. DMC18 GFF459 hypothetical protein insig. 27 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_19490 GGDEF domain-containing protein cofit 26 98
o Shewanella oneidensis MR-1 SO4323 GGDEF domain protein (NCBI ptt file) cofit 27 98
o Shewanella sp. ANA-3 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) sig. 26 98
o Shewanella loihica PV-4 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 96
o Shewanella amazonensis SB2B Sama_3264 putative diguanylate phosphodiesterase (RefSeq) sig. 25 98
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 23 100
  Magnetospirillum magneticum AMB-1 AMB_RS03740 signal transduction protein insig. 29 70
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 76
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 76
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 31 64
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 31 68
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 24 76
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 25 69
  Dechlorosoma suillum PS Dsui_1565 diguanylate cyclase (GGDEF) domain-containing protein cofit 27 69
  Shewanella sp. ANA-3 Shewana3_2308 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) cofit 31 66
  Paraburkholderia sabiae LMG 24235 QEN71_RS13125 EAL domain-containing protein insig. 29 68
  Vibrio cholerae E7946 ATCC 55056 CSW01_03465 GGDEF-domain containing protein cofit 27 69
  Pseudomonas syringae pv. syringae B728a Psyr_2432 diguanylate cyclase/phosphodiesterase insig. 30 68
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2432 diguanylate cyclase/phosphodiesterase insig. 30 68
  Pseudomonas aeruginosa PA14 IKLFDK_22535 bifunctional diguanylate cyclase/phosphodiesterase cofit 31 64
  Shewanella oneidensis MR-1 SO2216 sensory box protein (NCBI ptt file) insig. 31 66
  Rhodospirillum rubrum S1H Rru_A2763 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) insig. 30 64
  Marinobacter adhaerens HP15 HP15_806 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 28 65
  Agrobacterium fabrum C58 Atu3495 diguanylate cyclase sig. 27 68
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 29 64
  Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD insig. 26 68
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 28 76
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4790 sensory box/GGDEF domain/EAL domain protein sig. 30 64
  Methylophilus sp. DMC18 GFF2168 hypothetical protein insig. 27 73
  Acidovorax sp. GW101-3H11 Ac3H11_4268 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 31 63
  Paraburkholderia sabiae LMG 24235 QEN71_RS10745 EAL domain-containing protein insig. 25 76
  Paraburkholderia graminis OAS925 ABIE53_001117 diguanylate cyclase (GGDEF)-like protein insig. 28 68
  Pseudomonas aeruginosa PA14 IKLFDK_03805 PAS domain S-box protein insig. 27 74
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 28 66
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 29 65
  Pseudomonas fluorescens FW300-N2C3 AO356_14260 diguanylate cyclase insig. 30 64
  Pseudomonas simiae WCS417 PS417_12760 histidine kinase insig. 29 64
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS03860 EAL domain-containing protein insig. 31 68
  Rahnella sp. WP5 EX31_RS12230 RNase E specificity factor CsrD insig. 26 67
  Pseudomonas sp. RS175 PFR28_04079 Membrane-bound lytic murein transglycosylase F insig. 30 64
  Pseudomonas sp. S08-1 OH686_00995 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 27 65
  Pseudomonas sp. SVBP6 COO64_RS06790 EAL domain-containing protein cofit 29 64
  Caulobacter crescentus NA1000 CCNA_00692 PAS-family GGDEF/EAL protein insig. 29 67
  Caulobacter crescentus NA1000 Δfur CCNA_00692 PAS-family GGDEF/EAL protein cofit 29 67
  Bosea sp. OAE506 ABIE41_RS10320 EAL domain-containing protein insig. 29 65
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 28 64
  Rhodanobacter denitrificans MT42 LRK55_RS10715 EAL domain-containing protein insig. 30 68
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11010 EAL domain-containing protein insig. 30 68
  Pseudomonas fluorescens SBW25 PFLU_RS13445 bifunctional diguanylate cyclase/phosphodiesterase insig. 29 65
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13445 bifunctional diguanylate cyclase/phosphodiesterase insig. 29 65
  Cupriavidus basilensis FW507-4G11 RR42_RS03995 diguanylate cyclase insig. 28 64
  Pseudomonas syringae pv. syringae B728a Psyr_4493 PAS:GGDEF insig. 30 65
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4493 PAS:GGDEF cofit 30 65
  Pseudomonas aeruginosa PA14 IKLFDK_08335 Uncharacterized signaling protein PA1727 insig. 27 68
  Acidovorax sp. GW101-3H11 Ac3H11_4486 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 31 66
  Dechlorosoma suillum PS Dsui_0894 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 28 66
  Pseudomonas syringae pv. syringae B728a Psyr_1159 PAS:GGDEF insig. 27 66
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1159 PAS:GGDEF insig. 27 66
  Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 23 76
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 29 65
  Pseudomonas putida KT2440 PP_1761 diguanylate cyclase with phosphodiesterase domain strong 29 64
  Marinobacter adhaerens HP15 HP15_215 sensory box/GGDEF family protein insig. 27 63
  Pseudomonas aeruginosa PA14 IKLFDK_05475 diguanylate cyclase insig. 30 66
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2133 RNase E specificity factor CsrD strong 23 99
  Acidovorax sp. GW101-3H11 Ac3H11_1143 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 30 63
  Pseudomonas syringae pv. syringae B728a Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) cofit 28 66
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 28 66
  Pseudomonas sp. SVBP6 COO64_RS14580 bifunctional diguanylate cyclase/phosphodiesterase insig. 27 69
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2889.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 27 67
  Pseudomonas fluorescens FW300-N2E3 AO353_07390 diguanylate cyclase insig. 28 64
  Pseudomonas sp. S08-1 OH686_09725 Sensory box/GGDEF family protein cofit 29 65
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2512 sensory box/GGDEF domain/EAL domain protein insig. 29 64
  Pseudomonas sp. BP01 JOY50_RS16180 EAL domain-containing protein insig. 29 64
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 28 63
  Acidovorax sp. GW101-3H11 Ac3H11_2218 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 29 64
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1972.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 29 73
  Xanthobacter sp. DMC5 GFF425 Oxygen sensor protein DosP insig. 27 68
o Castellaniella sp019104865 MT123 ABCV34_RS11385 LapD/MoxY N-terminal periplasmic domain-containing protein cofit 25 97
  Pseudomonas sp. SVBP6 COO64_RS22585 EAL domain-containing protein insig. 28 64