Homologs of PGA1_c27070 from Phaeobacter inhibens DSM 17395

RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup)
SEED: RNA polymerase sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 100 100
o Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 73 99
o Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 57 85
o Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 56 86
o Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 54 94
o Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 57 84
o Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 57 84
o Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 53 98
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 52 85
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 51 90
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 50 86
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 47 85
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 48 82
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 48 82
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 50 81
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 48 84
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 46 79
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 44 83
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 44 83
  Rhizobium sp. OAE497 ABIE40_RS21790 sigma-70 family RNA polymerase sigma factor cofit 44 86
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 44 85
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 39 84
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 45 78
o Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 41 85
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 41 85
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 42 85
  Agrobacterium fabrum C58 Atu5490 ECF family RNA polymerase sigma factor insig. 39 82
o Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 42 85
  Azospirillum sp. SherDot2 MPMX19_01197 ECF RNA polymerase sigma factor EcfG insig. 41 83
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 41 77
  Azospirillum brasilense Sp245 AZOBR_RS14755 RNA polymerase sigma-70 factor insig. 41 83
o Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 40 85
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 42 79
  Sphingobium sp. HT1-2 GFF2028 hypothetical protein cofit 37 86
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 39 85
o Magnetospirillum magneticum AMB-1 AMB_RS13315 hypothetical protein insig. 42 81
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 40 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 40 87
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 39 82
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 37 90
o Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 38 83
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 40 83
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 37 86
o Variovorax sp. SCN45 GFF215 RNA polymerase sigma-54 factor RpoN insig. 38 82
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 38 83
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 33 83
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 37 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1476 RNA polymerase sigma factor, sigma-70 family insig. 33 80
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_10915 RNA polymerase subunit sigma strong 34 85
o Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 38 82
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11995 RNA polymerase subunit sigma insig. 34 82
  Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 35 90
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03722 ECF RNA polymerase sigma factor EcfG no data 38 86
  Azospirillum sp. SherDot2 MPMX19_00923 hypothetical protein insig. 39 82
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24230 RNA polymerase sigma factor strong 31 83
  Azospirillum brasilense Sp245 AZOBR_RS11020 RNA polymerase subunit sigma-70 no data 42 71
  Sphingobium sp. HT1-2 GFF4551 hypothetical protein cofit 35 78
o Pseudomonas orientalis W4I3 QF045_RS18740 sigma-70 family RNA polymerase sigma factor insig. 39 86
  Mycobacterium tuberculosis H37Rv Rv3223c Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) insig. 35 82
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 35 84
  Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 34 85
  Pseudomonas sp. DMC3 GFF1465 ECF RNA polymerase sigma factor EcfG insig. 37 86
  Pseudomonas simiae WCS417 PS417_17070 RNA polymerase subunit sigma-24 insig. 38 84
o Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 37 84
o Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 37 84
o Pseudomonas putida KT2440 PP_2888 putative ECF sigma factor PrtI no data 36 84
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2582 RNA polymerase sigma-54 factor RpoN insig. 34 90
  Alteromonas macleodii MIT1002 MIT1002_03872 RNA polymerase sigma factor SigM insig. 33 85
o Pseudomonas sp. BP01 JOY50_RS05860 sigma-70 family RNA polymerase sigma factor no data 34 84
o Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 38 81
  Phaeobacter inhibens DSM 17395 PGA1_78p00070 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' no data 32 82
  Pseudomonas fluorescens SBW25 PFLU_RS19010 sigma-70 family RNA polymerase sigma factor insig. 37 83
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19010 sigma-70 family RNA polymerase sigma factor sig. 37 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3977 RNA polymerase sigma-54 factor RpoN insig. 35 86
o Ralstonia sp. UNC404CL21Col ABZR87_RS02660 RNA polymerase sigma factor insig. 35 84
o Pseudomonas sp. SVBP6 COO64_RS10855 sigma-70 family RNA polymerase sigma factor insig. 37 83
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 36 88
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 35 83
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS07010 RNA polymerase sigma factor no data 36 84
o Ralstonia solanacearum UW163 UW163_RS06605 RNA polymerase sigma factor no data 36 84
  Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 35 86
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 32 82
  Pseudomonas fluorescens FW300-N2C3 AO356_01625 RNA polymerase subunit sigma-24 insig. 34 83
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2200 RNA polymerase sigma-54 factor RpoN sig. 34 83
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3411 RNA polymerase sigma factor, sigma-70 family insig. 33 78
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16550 RNA polymerase sigma factor strong 30 78
  Pseudomonas sp. RS175 PFR28_01251 ECF RNA polymerase sigma factor EcfG insig. 36 78
  Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 34 85
  Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 34 85
  Rhizobium sp. OAE497 ABIE40_RS11455 RNA polymerase sigma factor insig. 32 85
  Agrobacterium fabrum C58 Atu5283 ECF family RNA polymerase sigma factor no data 39 60
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16675 hypothetical protein insig. 34 76
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12270 RNA polymerase subunit sigma insig. 31 81
  Bifidobacterium breve UCC2003 BBR_RS16820 RNA polymerase sigma factor RpoE strong 33 74
  Sphingobium sp. HT1-2 GFF1466 RNA polymerase sigma-54 factor RpoN insig. 34 86
  Rahnella sp. WP5 EX31_RS05375 sigma-70 family RNA polymerase sigma factor insig. 33 85
  Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 32 77
  Bacteroides ovatus ATCC 8483 BACOVA_00669 Sigma-70 region 2 insig. 31 83
  Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 31 81
  Bacteroides thetaiotaomicron VPI-5482 BT1572 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 34 77