Homologs of Sama_0193 from Shewanella amazonensis SB2B

tRNA (uracil-5-)-methyltransferase (RefSeq)
SEED: tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35)
KEGG: tRNA (uracil-5-)-methyltransferase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella amazonensis SB2B Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) sig. 100 100
o Shewanella sp. ANA-3 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) insig. 72 100
o Shewanella loihica PV-4 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) insig. 71 100
o Shewanella oneidensis MR-1 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) sig. 71 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 67 99
o Pectobacterium carotovorum WPP14 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 62 100
o Pantoea sp. MT58 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 60 100
o Dickeya dianthicola ME23 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 61 100
o Dickeya dadantii 3937 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 61 100
o Erwinia tracheiphila SCR3 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 60 100
o Alteromonas macleodii MIT1002 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase insig. 60 99
o Dickeya dianthicola 67-19 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 61 100
o Klebsiella michiganensis M5al BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 60 100
o Rahnella sp. WP5 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 59 100
o Escherichia coli ECRC101 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 60 99
o Escherichia coli ECRC102 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 60 99
o Escherichia coli ECRC98 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA no data 60 99
o Escherichia coli ECRC99 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA no data 60 99
o Escherichia coli BL21 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase cofit 60 99
o Escherichia coli ECOR27 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 60 99
o Escherichia coli ECRC62 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 60 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 60 99
o Escherichia coli BW25113 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) sig. 60 99
o Escherichia fergusonii Becca EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 60 99
o Escherichia coli Nissle 1917 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 60 99
o Escherichia coli ECRC101 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 60 99
o Enterobacter sp. TBS_079 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 60 99
o Serratia liquefaciens MT49 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 58 100
o Escherichia coli ECOR38 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 59 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) cofit 59 100
o Enterobacter asburiae PDN3 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase insig. 58 100
o Acinetobacter radioresistens SK82 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 54 97
o Pseudomonas stutzeri RCH2 Psest_3451 tRNA (uracil-5-)-methyltransferase sig. 50 99
o Dechlorosoma suillum PS Dsui_2239 tRNA (uracil-5-)-methyltransferase insig. 49 100
o Pseudomonas putida KT2440 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase strong 49 99
o Pseudomonas fluorescens FW300-N2E3 AO353_13905 tRNA (uracil-5-)-methyltransferase sig. 49 98
o Pseudomonas sp. S08-1 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase cofit 48 99
o Pseudomonas sp. RS175 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 49 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) strong 48 99
o Pseudomonas simiae WCS417 PS417_24385 tRNA (uracil-5-)-methyltransferase sig. 48 98
o Pseudomonas fluorescens FW300-N2C3 AO356_15600 tRNA (uracil-5-)-methyltransferase insig. 48 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) insig. 48 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) sig. 48 98
o Pseudomonas fluorescens SBW25 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 47 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 47 99
o Pseudomonas syringae pv. syringae B728a Psyr_4287 tRNA (uracil-5-)-methyltransferase insig. 50 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4287 tRNA (uracil-5-)-methyltransferase insig. 50 99
  Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 32 49
  Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 33 49
  Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 33 49
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 33 49
  Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 33 49
  Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 32 49
  Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 33 49
  Escherichia coli ECRC101 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 49
  Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 49
  Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 49
  Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 32 49
  Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 32 49
  Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 49
  Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 49
  Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 31 48
  Marinobacter adhaerens HP15 HP15_790 23S rRNA 5-methyluridine methyltransferase insig. 30 49
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 30 53
  Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 27 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 29 55
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 29 52
  Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 28 75
  Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 31 52
  Phocaeicola dorei CL03T12C01 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 52
  Erwinia tracheiphila SCR3 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 49
  Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 51
  Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 47
  Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 31 51
  Pantoea sp. MT58 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 29 49
  Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 51
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 31 48
  Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 47
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 55
  Pseudomonas fluorescens FW300-N2C3 AO356_19055 23S rRNA methyltransferase insig. 29 48
  Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 47
  Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 29 48
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 29 48
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 30 49
  Pseudomonas fluorescens SBW25 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 29 53
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 29 53
  Pseudomonas sp. S08-1 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA cofit 31 51
  Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 29 53
  Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 32 48
  Bacteroides thetaiotaomicron VPI-5482 BT0643 RNA methyltransferase (NCBI ptt file) sig. 29 52
  Pseudomonas syringae pv. syringae B728a Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 31 48
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 31 48
  Bacteroides ovatus ATCC 8483 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA insig. 27 55
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 24 72
  Pseudomonas sp. RS175 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 29 52
  Vibrio cholerae E7946 ATCC 55056 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 26 50
  Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 30 51
  Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 28 48
  Acinetobacter radioresistens SK82 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 29 49
  Rhodanobacter denitrificans MT42 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 49