Homologs of Shew_3126 from Shewanella loihica PV-4

2'-5' RNA ligase (RefSeq)
SEED: 2'-5' RNA ligase
KEGG: 2'-5' RNA ligase

62 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_3126 2'-5' RNA ligase (RefSeq) insig. 100 100
o Shewanella amazonensis SB2B Sama_2974 putative 2'-5' RNA ligase (RefSeq) insig. 46 97
o Pseudomonas stutzeri RCH2 Psest_3556 2'-5' RNA ligase insig. 35 98
o Shewanella oneidensis MR-1 SO0627 putative 2'-5' RNA ligase (NCBI ptt file) insig. 41 97
o Shewanella sp. ANA-3 Shewana3_0619 2'-5' RNA ligase (RefSeq) cofit 43 97
o Kangiella aquimarina DSM 16071 B158DRAFT_0039 2'-5' RNA ligase insig. 34 99
  Alteromonas macleodii MIT1002 MIT1002_00405 2'-5'-RNA ligase insig. 35 80
  Escherichia coli Nissle 1917 ECOLIN_RS00825 RNA 2',3'-cyclic phosphodiesterase no data 35 97
o Escherichia coli Nissle 1917 ECOLIN_RS25975 RNA 2',3'-cyclic phosphodiesterase no data 35 97
o Escherichia fergusonii Becca EFB2_03897 RNA 2',3'-cyclic phosphodiesterase insig. 35 97
o Escherichia coli ECOR27 NOLOHH_02680 thpR RNA 2',3'-cyclic phosphodiesterase cofit 35 97
o Escherichia coli ECRC62 BNILDI_08990 thpR RNA 2',3'-cyclic phosphodiesterase cofit 35 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03515 'RNA 2',3'-cyclic phosphodiesterase' transl_table=11 insig. 35 97
o Escherichia coli BW25113 b0147 yadP orf, hypothetical protein (VIMSS) strong 35 97
o Serratia liquefaciens MT49 IAI46_21200 RNA 2',3'-cyclic phosphodiesterase insig. 34 97
o Escherichia coli ECRC100 OKFHMN_10335 thpR RNA 2',3'-cyclic phosphodiesterase cofit 35 97
o Escherichia coli ECRC101 MCAODC_00850 thpR RNA 2',3'-cyclic phosphodiesterase insig. 35 97
o Escherichia coli ECRC102 NIAGMN_08185 thpR RNA 2',3'-cyclic phosphodiesterase insig. 35 97
o Escherichia coli ECRC98 JDDGAC_13930 thpR RNA 2',3'-cyclic phosphodiesterase cofit 35 97
o Escherichia coli ECRC99 KEDOAH_17820 thpR RNA 2',3'-cyclic phosphodiesterase no data 35 97
o Escherichia coli ECOR38 HEPCGN_08285 thpR RNA 2',3'-cyclic phosphodiesterase insig. 34 97
o Dickeya dianthicola 67-19 HGI48_RS16040 RNA 2',3'-cyclic phosphodiesterase insig. 33 97
o Dickeya dianthicola ME23 DZA65_RS17125 RNA 2',3'-cyclic phosphodiesterase insig. 33 97
o Escherichia coli BL21 ECD_00146 2'-5' RNA ligase insig. 35 97
o Klebsiella michiganensis M5al BWI76_RS05025 2'-5' RNA ligase sig. 32 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF85 '2'-5' RNA ligase' transl_table=11 insig. 34 97
o Dickeya dadantii 3937 DDA3937_RS15925 RNA 2',3'-cyclic phosphodiesterase insig. 32 97
o Enterobacter asburiae PDN3 EX28DRAFT_3736 2'-5' RNA ligase insig. 32 97
o Pectobacterium carotovorum WPP14 HER17_RS05590 RNA 2',3'-cyclic phosphodiesterase cofit 35 95
o Pantoea sp. MT58 IAI47_15625 RNA 2',3'-cyclic phosphodiesterase insig. 34 98
o Pseudomonas putida KT2440 PP_2424 putative 2'-5' RNA ligase insig. 32 98
o Rahnella sp. WP5 EX31_RS03240 RNA 2',3'-cyclic phosphodiesterase insig. 31 97
o Erwinia tracheiphila SCR3 LU632_RS20070 thpR RNA 2',3'-cyclic phosphodiesterase insig. 34 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4348 2'-5' RNA ligase no data 30 98
o Enterobacter sp. TBS_079 MPMX20_00833 RNA 2',3'-cyclic phosphodiesterase insig. 29 97
o Rhodopseudomonas palustris CGA009 TX73_001005 RNA 2',3'-cyclic phosphodiesterase insig. 31 98
o Pseudomonas sp. S08-1 OH686_01815 2'-5' RNA ligase insig. 33 97
o Rhodospirillum rubrum S1H Rru_A3649 2',5' RNA ligase (NCBI) insig. 31 98
o Pseudomonas fluorescens FW300-N2E3 AO353_29050 2'-5' RNA ligase insig. 31 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS28000 RNA 2',3'-cyclic phosphodiesterase insig. 28 97
o Azospirillum sp. SherDot2 MPMX19_02595 RNA 2',3'-cyclic phosphodiesterase insig. 28 98
o Dechlorosoma suillum PS Dsui_2392 2''-5'' RNA ligase insig. 29 81
o Ralstonia solanacearum GMI1000 RS_RS11870 RNA 2',3'-cyclic phosphodiesterase insig. 28 95
  Azospirillum brasilense Sp245 AZOBR_RS02280 2'-5' RNA ligase no data 31 73
o Lysobacter sp. OAE881 ABIE51_RS12220 RNA 2',3'-cyclic phosphodiesterase insig. 29 97
  Rhizobium sp. OAE497 ABIE40_RS18230 RNA 2',3'-cyclic phosphodiesterase insig. 28 73
o Magnetospirillum magneticum AMB-1 AMB_RS21900 RNA 2',3'-cyclic phosphodiesterase no data 28 97
o Bosea sp. OAE506 ABIE41_RS04825 RNA 2',3'-cyclic phosphodiesterase insig. 30 97
  Sinorhizobium meliloti 1021 SMc03835 2'-5' RNA ligase sig. 28 73
  Caulobacter crescentus NA1000 CCNA_03776 2'-5' RNA ligase strong 28 94
  Caulobacter crescentus NA1000 Δfur CCNA_03776 2'-5' RNA ligase cofit 28 94
  Agrobacterium fabrum C58 Atu2678 2'-5' RNA ligase sig. 27 73
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_12700 RNA 2',3'-cyclic phosphodiesterase insig. 32 96
o Rhodanobacter sp. FW510-T8 OKGIIK_04420 thpR RNA 2',3'-cyclic phosphodiesterase insig. 30 98
  Castellaniella sp019104865 MT123 ABCV34_RS12550 RNA 2',3'-cyclic phosphodiesterase insig. 29 98
  Variovorax sp. SCN45 GFF203 hypothetical protein insig. 31 95
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS12890 RNA 2',3'-cyclic phosphodiesterase cofit 30 72
  Paraburkholderia graminis OAS925 ABIE53_002399 2'-5' RNA ligase insig. 27 97
  Ralstonia solanacearum PSI07 RPSI07_RS16920 RNA 2',3'-cyclic phosphodiesterase insig. 29 72
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS00580 RNA 2',3'-cyclic phosphodiesterase insig. 28 72
  Ralstonia solanacearum UW163 UW163_RS13910 RNA 2',3'-cyclic phosphodiesterase insig. 28 72
  Marinobacter adhaerens HP15 HP15_881 2',5' RNA ligase insig. 27 97