Homologs of Dshi_2587 from Dinoroseobacter shibae DFL-12

DNA damage response exonuclease, associated with a ligase (from data)
Original annotation: exonuclease of the beta-lactamase fold involved in RNA processing-like protein (RefSeq)
KEGG: putative mRNA 3-end processing factor

55 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dinoroseobacter shibae DFL-12 Dshi_2587 DNA damage response exonuclease, associated with a ligase (from data) strong 100 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS20350 ligase-associated DNA damage response exonuclease insig. 54 96
o Cellulophaga baltica 18 M666_RS06770 ligase-associated DNA damage response exonuclease insig. 52 95
o Pseudomonas sp. S08-1 OH686_06055 putative exonuclease, DNA ligase-associated insig. 57 96
o Variovorax sp. SCN45 GFF3696 mRNA 3-end processing factor insig. 56 99
o Variovorax sp. OAS795 ABID97_RS00395 ligase-associated DNA damage response exonuclease insig. 55 100
o Pseudomonas syringae pv. syringae B728a Psyr_3872 conserved hypothetical protein insig. 53 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3872 conserved hypothetical protein insig. 53 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS21350 ligase-associated DNA damage response exonuclease insig. 52 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3181 mRNA 3-end processing factor insig. 56 96
o Pseudomonas stutzeri RCH2 Psest_1649 Predicted exonuclease of the beta-lactamase fold involved in RNA processing insig. 54 96
o Pseudomonas sp. DMC3 GFF2149 hypothetical protein insig. 56 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1242 mRNA 3-end processing factor insig. 53 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS20345 ligase-associated DNA damage response exonuclease insig. 56 94
o Herbaspirillum seropedicae SmR1 HSERO_RS11400 exonuclease sig. 52 96
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01455 hypothetical protein cofit 56 92
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02820 putative mRNA 3-end processing factor insig. 54 96
o Pseudomonas sp. BP01 JOY50_RS24065 ligase-associated DNA damage response exonuclease insig. 56 96
o Burkholderia phytofirmans PsJN BPHYT_RS26305 exonuclease insig. 53 96
o Pseudomonas simiae WCS417 PS417_06425 exonuclease insig. 56 92
o Pseudomonas fluorescens SBW25 PFLU_RS06490 ligase-associated DNA damage response exonuclease insig. 56 92
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06490 ligase-associated DNA damage response exonuclease insig. 56 92
o Pseudomonas sp. RS175 PFR28_00509 hypothetical protein insig. 55 94
o Pseudomonas putida KT2440 PP_1106 conserved protein of unknown function insig. 54 96
o Paraburkholderia graminis OAS925 ABIE53_005969 putative mRNA 3-end processing factor insig. 54 94
o Pseudomonas fluorescens FW300-N2C3 AO356_05485 DNA ligase-associated DEXH box helicase insig. 55 94
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2956 mRNA 3-end processing factor insig. 56 92
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09100 DNA ligase-associated DEXH box helicase insig. 46 95
o Acidovorax sp. GW101-3H11 Ac3H11_4921 mRNA 3-end processing factor insig. 58 86
o Lysobacter sp. OAE881 ABIE51_RS03750 ligase-associated DNA damage response exonuclease insig. 52 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3654.1 hypothetical protein insig. 49 95
o Rhodopseudomonas palustris CGA009 TX73_004140 ligase-associated DNA damage response exonuclease insig. 44 98
o Xanthobacter sp. DMC5 GFF152 hypothetical protein insig. 43 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08710 ligase-associated DNA damage response exonuclease insig. 42 98
o Azospirillum sp. SherDot2 MPMX19_02216 hypothetical protein insig. 42 96
o Rhizobium sp. OAE497 ABIE40_RS04630 ligase-associated DNA damage response exonuclease insig. 42 95
o Azospirillum brasilense Sp245 AZOBR_RS09955 beta-lactamase insig. 44 88
o Agrobacterium fabrum C58 Atu0839 hypothetical protein sig. 41 95
o Sinorhizobium meliloti 1021 SMc03176 hypothetical protein insig. 43 95
o Caulobacter crescentus NA1000 CCNA_03759 mRNA 3'-end processing factor sig. 42 93
o Caulobacter crescentus NA1000 Δfur CCNA_03759 mRNA 3'-end processing factor cofit 42 93
o Bosea sp. OAE506 ABIE41_RS24100 ligase-associated DNA damage response exonuclease insig. 43 92
o Sphingobium sp. HT1-2 GFF106 mRNA 3-end processing factor insig. 41 92
o Alteromonas macleodii MIT1002 MIT1002_03767 Ribonuclease insig. 38 92
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3852 putative exonuclease, DNA ligase-associated insig. 41 87
o Phaeobacter inhibens DSM 17395 PGA1_262p00510 Predicted exonuclease of the beta-lactamase fold involved in RNA processing sig. 37 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13225 exonuclease sig. 29 92
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14095 MBL fold metallo-hydrolase insig. 27 94
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01950 MBL fold metallo-hydrolase insig. 32 31
  Ralstonia solanacearum GMI1000 RS_RS00995 MBL fold metallo-hydrolase insig. 31 34
  Sphingobium sp. HT1-2 GFF5006 Metallo-beta-lactamase family protein, RNA-specific cofit 31 31
  Ralstonia sp. UNC404CL21Col ABZR87_RS19990 MBL fold metallo-hydrolase insig. 31 39
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11070 MBL fold metallo-hydrolase insig. 29 32
  Marinobacter adhaerens HP15 HP15_2406 metallo-beta-lactamase family protein insig. 31 34
  Cupriavidus basilensis FW507-4G11 RR42_RS09610 mRNA 3'-end processing factor insig. 31 35