| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | 1.0 | Xcc-8004.4478.1 | | Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) | 0.67 | 14 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS00325 | | response regulator transcription factor | 0.77 | QEN71_RS05245 | | CoA transferase subunit A | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | 0.70 | H281DRAFT_04495 | | 3-oxoacid CoA-transferase subunit A | — | — |
| Burkholderia phytofirmans PsJN | 0.45 | BPHYT_RS01625 | | chemotaxis protein CheY | 0.74 | BPHYT_RS13675 | | succinyl-CoA:3-ketoacid-CoA transferase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_000420 | | two-component system response regulator RegA | 0.70 | ABIE53_002909 | | 3-oxoacid CoA-transferase subunit A | — | — |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS13000 | | chemotaxis protein CheY | 0.71 | HSERO_RS23190 | | succinyl-CoA:3-ketoacid-CoA transferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.59 | Psyr_3237 | | 3-oxoacid CoA-transferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.59 | Psyr_3237 | | 3-oxoacid CoA-transferase | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_05335 | | chemotaxis protein CheY | 0.55 | AO353_27935 | | succinyl-CoA--3-ketoacid-CoA transferase | — | — |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS03965 | | DNA-binding response regulator | 0.72 | UW163_RS15140 | | CoA transferase subunit A | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.72 | RALBFv3_RS01830 | | CoA transferase subunit A | low | > 76 |
| Shewanella oneidensis MR-1 | 0.41 | SO4172 | | DNA-binding response regulator (NCBI ptt file) | 0.60 | SO1892 | atoD | acetate CoA-transferase, subunit A (NCBI ptt file) | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS05135 | | response regulator transcription factor | 0.70 | ABZR87_RS13770 | | CoA transferase subunit A | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | 0.55 | Pf1N1B4_5833 | | Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) | low | > 87 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS00200 | | DNA-binding response regulator | 0.76 | RS_RS07905 | | CoA transferase subunit A | low | > 80 |
| Pseudomonas putida KT2440 | 0.41 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.57 | PP_3122 | | acetoacetyl CoA-transferase (subunit A) | low | > 96 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_04100 | | chemotaxis protein CheY | 0.55 | PS417_10525 | | succinyl-CoA:3-ketoacid-CoA transferase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_07205 | | chemotaxis protein CheY | 0.55 | AO356_21650 | | succinyl-CoA--3-ketoacid-CoA transferase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.55 | PFLU_RS10585 | | CoA transferase subunit A | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS23750 | | DNA-binding response regulator | 0.72 | RPSI07_RS15660 | | CoA transferase subunit A | low | > 81 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3707 | | response regulator receiver protein (RefSeq) | 0.59 | Shewana3_1667 | | 3-oxoacid CoA-transferase, A subunit (RefSeq) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.55 | PFLU_RS10585 | | CoA transferase subunit A | low | > 109 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.56 | PFR28_01325 | | putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.55 | Pf6N2E2_2111 | | Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3338 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.69 | Psest_1078 | | acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) | low | > 67 |
| Shewanella loihica PV-4 | 0.41 | Shew_3342 | | two component Fis family transcriptional regulator (RefSeq) | 0.62 | Shew_2575 | | 3-oxoacid CoA-transferase, A subunit (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_1932 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.59 | B158DRAFT_2505 | | 3-oxoacid CoA-transferase, A subunit | low | > 40 |
| Shewanella amazonensis SB2B | 0.39 | Sama_3186 | | response regulator receiver protein (RefSeq) | 0.59 | Sama_0518 | | 3-oxoacid CoA-transferase (RefSeq) | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | 0.63 | Dshi_1136 | | 3-oxoacid CoA-transferase, A subunit (RefSeq) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_01845 | | two-component response regulator protein | 0.66 | CCNA_00206 | | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A | low | > 67 |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_01845 | | two-component response regulator protein | 0.66 | CCNA_00206 | | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A | low | > 66 |
| Phaeobacter inhibens DSM 17395 | 0.37 | PGA1_c35390 | | photosynthetic apparatus regulatory protein RegA | 0.62 | PGA1_c06210 | | probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.37 | A4249_RS04475 | | response regulator transcription factor | 0.69 | A4249_RS02960 | | CoA transferase subunit A | low | > 48 |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS01085 | | chemotaxis protein CheY | 0.76 | RR42_RS06555 | | 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) | low | > 128 |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS19505 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.42 | ABIE40_RS19560 | | 3-oxoacid CoA-transferase subunit A | low | > 107 |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_06181 | | Photosynthetic apparatus regulatory protein RegA | 0.38 | MPMX19_03462 | | Acetate CoA-transferase subunit alpha | — | — |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS09795 | | response regulator transcription factor | 0.83 | ABIE51_RS04380 | | CoA transferase subunit A | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_1560 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.61 | Ga0059261_0265 | | 3-oxoacid CoA-transferase, A subunit | low | > 68 |
| Agrobacterium fabrum C58 | 0.35 | Atu0050 | | two component response regulator | 0.41 | Atu4547 | | 3-oxoadipate CoA-transferase subunit A | low | > 89 |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3147 | | Dna binding response regulator PrrA (RegA) | 0.71 | Ac3H11_132 | | Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) | — | — |
| Variovorax sp. SCN45 | 0.34 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.72 | GFF7371 | | Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) | low | > 127 |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS03875 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.64 | ABIE41_RS01850 | | CoA transferase subunit A | low | > 77 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS07610 | | response regulator transcription factor | 0.73 | ABID97_RS19440 | | CoA transferase subunit A | low | > 91 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.64 | TX73_021545 | | CoA transferase subunit A | low | > 86 |
Not shown: 10 genomes with orthologs for Xcc-8004.3041.1 only; 23 genomes with orthologs for Xcc-8004.4478.1 only