Conservation of cofitness between Xcc-8004.3816.1 and Xcc-8004.3370.1 in Xanthomonas campestris pv. campestris strain 8004

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3816.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 1.0 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R 0.55 5
Cupriavidus basilensis FW507-4G11 0.74 RR42_RS32595 cytochrome o ubiquinol oxidase subunit I 0.38 RR42_RS13065 ribonuclease R low > 128
Dickeya dianthicola ME23 0.74 DZA65_RS05980 cytochrome o ubiquinol oxidase subunit I 0.37 DZA65_RS18405 ribonuclease R low > 75
Dickeya dadantii 3937 0.74 DDA3937_RS05610 cytochrome o ubiquinol oxidase subunit I 0.38 DDA3937_RS17260 ribonuclease R low > 74
Serratia liquefaciens MT49 0.74 IAI46_04980 cytochrome o ubiquinol oxidase subunit I 0.38 IAI46_01660 ribonuclease R low > 86
Dickeya dianthicola 67-19 0.74 HGI48_RS05655 cytochrome o ubiquinol oxidase subunit I 0.37 HGI48_RS17315 ribonuclease R low > 71
Escherichia coli ECRC62 0.73 BNILDI_22715 cyoB cytochrome o ubiquinol oxidase subunit I 0.39 BNILDI_07005 rnr ribonuclease R low > 75
Escherichia fergusonii Becca 0.73 EFB2_03626 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.39 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECRC99 0.73 KEDOAH_19600 cyoB cytochrome o ubiquinol oxidase subunit I 0.40 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli BW25113 0.73 b0431 cyoB cytochrome o ubiquinol oxidase subunit I (NCBI) 0.40 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli ECRC102 0.73 NIAGMN_06420 cyoB cytochrome o ubiquinol oxidase subunit I 0.40 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_03242 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.39 OHPLBJKB_03863 Ribonuclease R 0.77 14
Escherichia coli ECRC101 0.73 MCAODC_27590 cyoB cytochrome o ubiquinol oxidase subunit I 0.40 MCAODC_02735 rnr ribonuclease R low > 87
Escherichia coli ECOR38 0.73 HEPCGN_06980 cyoB cytochrome o ubiquinol oxidase subunit I 0.39 HEPCGN_10450 rnr ribonuclease R 0.68 84
Escherichia coli ECOR27 0.73 NOLOHH_01300 cyoB cytochrome o ubiquinol oxidase subunit I 0.39 NOLOHH_04485 rnr ribonuclease R low > 75
Escherichia coli ECRC100 0.73 OKFHMN_08365 cyoB cytochrome o ubiquinol oxidase subunit I 0.40 OKFHMN_12220 rnr ribonuclease R low > 80
Escherichia coli BL21 0.73 ECD_00382 cytochrome o ubiquinol oxidase subunit I 0.40 ECD_04046 exoribonuclease R, RNase R low > 61
Escherichia coli Nissle 1917 0.73 ECOLIN_RS02590 cytochrome o ubiquinol oxidase subunit I 0.40 ECOLIN_RS24265 ribonuclease R low > 55
Escherichia coli ECRC98 0.73 JDDGAC_12020 cyoB cytochrome o ubiquinol oxidase subunit I 0.40 JDDGAC_15860 rnr ribonuclease R 0.83 17
Ralstonia solanacearum GMI1000 0.73 RS_RS14605 cytochrome o ubiquinol oxidase subunit I 0.39 RS_RS06155 ribonuclease R low > 80
Ralstonia solanacearum PSI07 0.73 RPSI07_RS10570 cytochrome o ubiquinol oxidase subunit I 0.38 RPSI07_RS18030 ribonuclease R low > 81
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS02330 cytochrome o ubiquinol oxidase subunit I 0.38 ABZR87_RS10985 ribonuclease R low > 80
Pectobacterium carotovorum WPP14 0.73 HER17_RS15880 cytochrome o ubiquinol oxidase subunit I 0.38 HER17_RS03835 ribonuclease R low > 75
Klebsiella michiganensis M5al 0.73 BWI76_RS06490 cytochrome ubiquinol oxidase subunit I 0.39 BWI76_RS02575 exoribonuclease R low > 92
Rahnella sp. WP5 0.72 EX31_RS22215 cytochrome o ubiquinol oxidase subunit I 0.39 EX31_RS08785 ribonuclease R low > 89
Enterobacter sp. TBS_079 0.72 MPMX20_01022 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.39 MPMX20_00460 Ribonuclease R low > 85
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS06655 cytochrome o ubiquinol oxidase subunit I 0.38 RALBFv3_RS15345 ribonuclease R low > 76
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2540 cytochrome o ubiquinol oxidase, subunit I 0.39 EX28DRAFT_3376 ribonuclease R low > 76
Ralstonia solanacearum UW163 0.72 UW163_RS06970 cytochrome o ubiquinol oxidase subunit I 0.38 UW163_RS12810 ribonuclease R — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF4345 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.40 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 low > 78
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS15345 cytochrome o ubiquinol oxidase subunit I 0.36 QEN71_RS22925 ribonuclease R low > 153
Pantoea sp. MT58 0.71 IAI47_14685 cytochrome o ubiquinol oxidase subunit I 0.40 IAI47_02625 ribonuclease R low > 76
Shewanella loihica PV-4 0.70 Shew_0367 cytochrome-c oxidase (RefSeq) 0.37 Shew_3289 ribonuclease R (RefSeq) low > 60
Erwinia tracheiphila SCR3 0.70 LU632_RS18380 cyoB cytochrome o ubiquinol oxidase subunit I 0.39 LU632_RS21750 rnr ribonuclease R — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS25215 cytochrome o ubiquinol oxidase subunit I 0.40 PFLU_RS02625 ribonuclease R 0.63 66
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS25215 cytochrome o ubiquinol oxidase subunit I 0.40 PFLU_RS02625 ribonuclease R low > 109
Alteromonas macleodii MIT1002 0.69 MIT1002_03928 Ubiquinol oxidase subunit 1 0.37 MIT1002_03606 Ribonuclease R low > 70
Shewanella sp. ANA-3 0.69 Shewana3_4032 cytochrome c oxidase, subunit I (RefSeq) 0.36 Shewana3_0697 RNAse R (RefSeq) low > 73
Pseudomonas simiae WCS417 0.69 PS417_23385 cytochrome o ubiquinol oxidase subunit I 0.40 PS417_02555 exoribonuclease R low > 88
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_1142 cytochrome bo3 quinol oxidase subunit 1 apoprotein 0.39 Psyr_0579 RNAse R — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_1142 cytochrome bo3 quinol oxidase subunit 1 apoprotein 0.39 Psyr_0579 RNAse R — —
Caulobacter crescentus NA1000 Δfur 0.69 CCNA_01850 quinol cytochrome oxidase polypeptide I 0.21 CCNA_02537 ribonuclease R low > 67
Caulobacter crescentus NA1000 0.69 CCNA_01850 quinol cytochrome oxidase polypeptide I 0.21 CCNA_02537 ribonuclease R low > 66
Pseudomonas putida KT2440 0.68 PP_0813 cytochrome bo terminal oxidase subunit I 0.40 PP_4880 exoribonuclease R — —
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS24920 cytochrome O ubiquinol oxidase 0.36 BPHYT_RS08455 ribonuclease R low > 109
Rhizobium sp. OAE497 0.67 ABIE40_RS20865 cytochrome o ubiquinol oxidase subunit I 0.22 ABIE40_RS07350 ribonuclease R low > 107
Acinetobacter radioresistens SK82 0.67 MPMX26_01161 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.32 MPMX26_02684 Ribonuclease R low > 36
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_15455 cytochrome o ubiquinol oxidase subunit I 0.39 AO353_13200 exoribonuclease R low > 101
Paraburkholderia graminis OAS925 0.67 ABIE53_005341 cytochrome o ubiquinol oxidase subunit 1 0.36 ABIE53_001940 ribonuclease R low > 113
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_5318 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.40 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R 0.36 7
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_972 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.39 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_16965 cytochrome o ubiquinol oxidase subunit I 0.40 AO356_08610 exoribonuclease R low > 104
Pseudomonas sp. RS175 0.67 PFR28_00243 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.39 PFR28_05130 Ribonuclease R low > 88
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS12315 cytochrome O ubiquinol oxidase 0.35 HSERO_RS09290 ribonuclease R — —
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_03427 cytochrome bo3 quinol oxidase subunit 1 apoprotein 0.36 H281DRAFT_00712 RNAse R low > 103
Agrobacterium fabrum C58 0.66 Atu0141 cytochrome O ubiquinol oxidase subunit I 0.22 Atu1303 exoribonuclease low > 89
Azospirillum sp. SherDot2 0.66 MPMX19_06176 Cytochrome bo(3) ubiquinol oxidase subunit 1 0.23 MPMX19_01812 Ribonuclease R — —
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_4935 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.39 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Sinorhizobium meliloti 1021 0.65 SM_b21488 cytochrome o ubiquinol oxidase subunit I 0.22 SMc01365 exoribonuclease II protein low > 103
Lysobacter sp. OAE881 0.65 ABIE51_RS09770 cytochrome o ubiquinol oxidase subunit I 0.66 ABIE51_RS07475 ribonuclease R low > 62
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS07620 cytochrome o ubiquinol oxidase subunit I 0.50 ABZR86_RS08270 ribonuclease R low > 74
Sphingomonas koreensis DSMZ 15582 0.64 Ga0059261_1565 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) 0.20 Ga0059261_3266 ribonuclease R low > 68

Not shown: 6 genomes with orthologs for Xcc-8004.3816.1 only; 20 genomes with orthologs for Xcc-8004.3370.1 only