Conservation of cofitness between Xcc-8004.3403.1 and Xcc-8004.2931.1 in Xanthomonas campestris pv. campestris strain 8004

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3403.1 Fumarate hydratase class II (EC 4.2.1.2) 1.0 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.44 8
Lysobacter sp. OAE881 0.77 ABIE51_RS09015 class II fumarate hydratase 0.80 ABIE51_RS13245 phosphoglycerate dehydrogenase low > 62
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_06345 aspA aspartate ammonia-lyase 0.78 OKGIIK_10055 serA phosphoglycerate dehydrogenase low > 52
Rhodanobacter denitrificans MT42 0.70 LRK55_RS00660 class II fumarate hydratase 0.80 LRK55_RS02935 phosphoglycerate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.70 LRK54_RS00885 class II fumarate hydratase 0.79 LRK54_RS03185 phosphoglycerate dehydrogenase low > 59
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS05855 class II fumarate hydratase 0.82 ABZR86_RS09635 phosphoglycerate dehydrogenase low > 74
Pseudomonas simiae WCS417 0.60 PS417_04305 aspartate ammonia-lyase 0.64 PS417_27040 3-phosphoglycerate dehydrogenase low > 88
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_07895 class II fumarate hydratase 0.61 CSW01_12555 phosphoglycerate dehydrogenase low > 62
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_5022 Fumarate hydratase class II (EC 4.2.1.2) 0.64 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 87
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_1088 Fumarate hydratase class II (EC 4.2.1.2) 0.64 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas fluorescens SBW25 0.58 PFLU_RS04360 class II fumarate hydratase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS04360 class II fumarate hydratase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase low > 109
Pseudomonas putida KT2440 0.58 PP_0944 fumarate hydratase (class 2) 0.64 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase low > 96
Pseudomonas sp. RS175 0.58 PFR28_00165 Fumarate hydratase class II 0.64 PFR28_04842 D-3-phosphoglycerate dehydrogenase low > 88
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3276 Fumarate hydratase class II (EC 4.2.1.2) 0.64 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 103
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_07075 aspartate ammonia-lyase 0.64 AO356_10300 3-phosphoglycerate dehydrogenase low > 104
Shewanella amazonensis SB2B 0.56 Sama_0822 fumarate hydratase (RefSeq) 0.64 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.56 HP15_3132 fumarate hydratase class II 0.62 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein — —
Shewanella loihica PV-4 0.55 Shew_0068 fumarate lyase (RefSeq) 0.63 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.53 MIT1002_03167 Fumarate hydratase class II 0.64 MIT1002_02993 D-3-phosphoglycerate dehydrogenase low > 70
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_1200 fumarase, class II (EC 4.2.1.2) 0.63 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases low > 40
Acinetobacter radioresistens SK82 0.48 MPMX26_01446 Fumarate hydratase class II 0.61 MPMX26_02773 D-3-phosphoglycerate dehydrogenase low > 36
Escherichia coli Nissle 1917 0.46 ECOLIN_RS08995 class II fumarate hydratase 0.61 ECOLIN_RS16210 phosphoglycerate dehydrogenase — —
Escherichia coli ECOR38 0.46 HEPCGN_06025 fumC class II fumarate hydratase 0.61 HEPCGN_18760 serA phosphoglycerate dehydrogenase low > 87
Escherichia coli ECOR27 0.46 NOLOHH_18155 fumC class II fumarate hydratase 0.61 NOLOHH_11370 serA phosphoglycerate dehydrogenase low > 75
Escherichia fergusonii Becca 0.46 EFB2_02381 Fumarate hydratase class II 0.61 EFB2_00990 D-3-phosphoglycerate dehydrogenase low > 86
Escherichia coli BL21 0.46 ECD_01580 fumarate hydratase (fumarase C),aerobic Class II 0.61 ECD_02744 D-3-phosphoglycerate dehydrogenase — —
Escherichia coli ECRC101 0.45 MCAODC_17760 fumC class II fumarate hydratase 0.61 MCAODC_09980 serA phosphoglycerate dehydrogenase low > 87
Escherichia coli ECRC62 0.45 BNILDI_16945 fumC class II fumarate hydratase 0.61 BNILDI_09905 serA phosphoglycerate dehydrogenase low > 75
Escherichia coli ECRC98 0.45 JDDGAC_02240 fumC class II fumarate hydratase 0.61 JDDGAC_23100 serA phosphoglycerate dehydrogenase low > 86
Escherichia coli BW25113 0.45 b1611 fumC fumarate hydratase (NCBI) 0.61 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) low > 76
Escherichia coli ECRC99 0.45 KEDOAH_00455 fumC class II fumarate hydratase 0.61 KEDOAH_08680 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC102 0.45 NIAGMN_00425 fumC class II fumarate hydratase 0.61 NIAGMN_17225 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC100 0.45 OKFHMN_27650 fumC class II fumarate hydratase 0.61 OKFHMN_19460 serA phosphoglycerate dehydrogenase low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_02115 Fumarate hydratase class II 0.61 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase low > 73
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1608 fumarase, class II (EC 4.2.1.2) 0.62 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Serratia liquefaciens MT49 0.44 IAI46_11655 class II fumarate hydratase 0.62 IAI46_20900 phosphoglycerate dehydrogenase 0.55 22
Klebsiella michiganensis M5al 0.44 BWI76_RS16270 fumarate hydratase, class II 0.63 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase low > 92
Rahnella sp. WP5 0.44 EX31_RS06965 class II fumarate hydratase 0.61 EX31_RS21470 phosphoglycerate dehydrogenase low > 89
Azospirillum sp. SherDot2 0.44 MPMX19_01424 Fumarate hydratase class II 0.57 MPMX19_00753 D-3-phosphoglycerate dehydrogenase — —
Enterobacter sp. TBS_079 0.44 MPMX20_02022 Fumarate hydratase class II 0.61 MPMX20_03771 D-3-phosphoglycerate dehydrogenase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF1806 Fumarate hydratase class II (EC 4.2.1.2) 0.60 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 78
Erwinia tracheiphila SCR3 0.43 LU632_RS12335 fumC class II fumarate hydratase 0.62 LU632_RS05855 serA phosphoglycerate dehydrogenase low > 74
Pantoea sp. MT58 0.43 IAI47_10335 class II fumarate hydratase 0.62 IAI47_03725 phosphoglycerate dehydrogenase low > 76
Dickeya dadantii 3937 0.43 DDA3937_RS10655 class II fumarate hydratase 0.61 DDA3937_RS18480 phosphoglycerate dehydrogenase low > 74
Dickeya dianthicola 67-19 0.43 HGI48_RS10655 class II fumarate hydratase 0.60 HGI48_RS18400 phosphoglycerate dehydrogenase low > 71
Pectobacterium carotovorum WPP14 0.43 HER17_RS10755 class II fumarate hydratase 0.59 HER17_RS02725 phosphoglycerate dehydrogenase low > 75
Dickeya dianthicola ME23 0.43 DZA65_RS11125 class II fumarate hydratase 0.60 DZA65_RS19540 phosphoglycerate dehydrogenase low > 75
Variovorax sp. OAS795 0.42 ABID97_RS17545 class II fumarate hydratase 0.64 ABID97_RS07235 phosphoglycerate dehydrogenase low > 91
Azospirillum brasilense Sp245 0.42 AZOBR_RS06120 fumarate hydratase 0.57 AZOBR_RS10940 3-phosphoglycerate dehydrogenase — —
Rhizobium sp. OAE497 0.42 ABIE40_RS10540 class II fumarate hydratase 0.55 ABIE40_RS30040 phosphoglycerate dehydrogenase low > 107
Variovorax sp. SCN45 0.42 GFF479 Fumarate hydratase class II (EC 4.2.1.2) 0.65 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 127
Acidovorax sp. GW101-3H11 0.42 Ac3H11_943 Fumarate hydratase class II (EC 4.2.1.2) 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4101 Fumarate hydratase class II (EC 4.2.1.2) 0.63 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 90
Castellaniella sp019104865 MT123 0.42 ABCV34_RS03655 class II fumarate hydratase 0.51 ABCV34_RS15150 phosphoglycerate dehydrogenase — —
Rhodospirillum rubrum S1H 0.41 Rru_A2129 Fumarate hydratase, class II (NCBI) 0.61 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_3661 Fumarate hydratase, class II 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_3661 Fumarate hydratase, class II 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_02150 fumarate hydratase 0.64 AO353_08510 3-phosphoglycerate dehydrogenase low > 101
Pseudomonas sp. S08-1 0.41 OH686_21015 fumarate hydratase, class II 0.63 OH686_11280 D-3-phosphoglycerate dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS33090 fumarate hydratase 0.47 RR42_RS27010 D-3-phosphoglycerate dehydrogenase low > 128
Bosea sp. OAE506 0.40 ABIE41_RS12805 class II fumarate hydratase 0.53 ABIE41_RS08410 phosphoglycerate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.40 Psest_2682 fumarate hydratase, class II 0.62 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Bifidobacterium breve UCC2003 0.33 BBR_RS12120 aspartate ammonia-lyase 0.45 BBR_RS16970 phosphoglycerate dehydrogenase low > 34

Not shown: 34 genomes with orthologs for Xcc-8004.3403.1 only; 2 genomes with orthologs for Xcc-8004.2931.1 only