Conservation of cofitness between Xcc-8004.1434.1 and Xcc-8004.2384.1 in Xanthomonas campestris pv. campestris strain 8004

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1434.1 FIG000859: hypothetical protein YebC 1.0 Xcc-8004.2384.1 Heat shock (predicted periplasmic) protein YciM, precursor 0.54 14
Lysobacter sp. OAE881 0.76 ABIE51_RS05035 YebC/PmpR family DNA-binding transcriptional regulator 0.81 ABIE51_RS09360 lipopolysaccharide assembly protein LapB low > 62
Dechlorosoma suillum PS 0.58 Dsui_0489 DNA-binding regulatory protein, YebC/PmpR family 0.27 Dsui_1946 putative N-acetylglucosaminyl transferase low > 51
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS17750 transcriptional regulator 0.27 HSERO_RS18395 N-acetylglucosaminyl transferase — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS04735 hypothetical protein 0.27 RR42_RS04505 N-acetylglucosaminyl transferase — —
Shewanella oneidensis MR-1 0.55 SO2432 conserved hypothetical protein TIGR01033 (NCBI ptt file) 0.30 SO2399 conserved hypothetical protein (NCBI ptt file) — —
Dickeya dadantii 3937 0.55 DDA3937_RS10065 YebC/PmpR family DNA-binding transcriptional regulator 0.32 DDA3937_RS12530 lipopolysaccharide assembly protein LapB — —
Shewanella sp. ANA-3 0.55 Shewana3_1954 hypothetical protein (RefSeq) 0.30 Shewana3_1980 tetratricopeptide repeat protein (RefSeq) — —
Dickeya dianthicola 67-19 0.55 HGI48_RS10095 YebC/PmpR family DNA-binding transcriptional regulator 0.32 HGI48_RS12585 lipopolysaccharide assembly protein LapB — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1123 DNA-binding regulatory protein, YebC/PmpR family 0.37 B158DRAFT_2330 Predicted N-acetylglucosaminyl transferase low > 40
Dickeya dianthicola ME23 0.55 DZA65_RS10510 YebC/PmpR family DNA-binding transcriptional regulator 0.32 DZA65_RS13035 lipopolysaccharide assembly protein LapB — —
Pectobacterium carotovorum WPP14 0.54 HER17_RS11855 YebC/PmpR family DNA-binding transcriptional regulator 0.33 HER17_RS09385 lipopolysaccharide assembly protein LapB — —
Shewanella amazonensis SB2B 0.54 Sama_1842 hypothetical protein (RefSeq) 0.30 Sama_1739 tetratricopeptide repeat protein (RefSeq) — —
Shewanella loihica PV-4 0.54 Shew_2078 hypothetical protein (RefSeq) 0.29 Shew_1957 hypothetical protein (RefSeq) — —
Erwinia tracheiphila SCR3 0.54 LU632_RS13425 YebC/PmpR family DNA-binding transcriptional regulator 0.32 LU632_RS12515 lapB lipopolysaccharide assembly protein LapB — —
Serratia liquefaciens MT49 0.54 IAI46_14635 YebC/PmpR family DNA-binding transcriptional regulator 0.33 IAI46_13930 lipopolysaccharide assembly protein LapB — —
Rahnella sp. WP5 0.53 EX31_RS11685 YebC/PmpR family DNA-binding transcriptional regulator 0.32 EX31_RS09865 lipopolysaccharide assembly protein LapB — —
Enterobacter sp. TBS_079 0.53 MPMX20_02769 putative transcriptional regulatory protein YebC 0.32 MPMX20_02495 Lipopolysaccharide assembly protein B — —
Escherichia coli ECRC100 0.53 OKFHMN_26255 putative transcriptional regulatory protein YebC 0.34 OKFHMN_02555 lapB lipopolysaccharide assembly protein LapB — —
Marinobacter adhaerens HP15 0.53 HP15_2043 protein YebC 0.25 HP15_1369 conserved hypothetical protein low > 73
Ralstonia solanacearum GMI1000 0.53 RS_RS10990 YebC/PmpR family DNA-binding transcriptional regulator 0.28 RS_RS04535 lipopolysaccharide assembly protein LapB — —
Escherichia coli ECRC99 0.53 KEDOAH_01850 putative transcriptional regulatory protein YebC 0.34 KEDOAH_26210 lapB lipopolysaccharide assembly protein LapB — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10380 YebC/PmpR family DNA-binding transcriptional regulator 0.34 ECOLIN_RS07725 lipopolysaccharide assembly protein LapB — —
Escherichia coli ECOR38 0.53 HEPCGN_04665 putative transcriptional regulatory protein YebC 0.34 HEPCGN_25645 lapB lipopolysaccharide assembly protein LapB — —
Escherichia fergusonii Becca 0.53 EFB2_02078 putative transcriptional regulatory protein YebC 0.34 EFB2_02645 Lipopolysaccharide assembly protein B — —
Paraburkholderia graminis OAS925 0.53 ABIE53_001546 YebC/PmpR family DNA-binding regulatory protein 0.33 ABIE53_003149 lipopolysaccharide biosynthesis regulator YciM — —
Escherichia coli ECRC62 0.53 BNILDI_15490 putative transcriptional regulatory protein YebC 0.34 BNILDI_18370 lapB lipopolysaccharide assembly protein LapB — —
Escherichia coli ECRC102 0.53 NIAGMN_01805 putative transcriptional regulatory protein YebC 0.34 NIAGMN_26725 lapB lipopolysaccharide assembly protein LapB — —
Escherichia coli BL21 0.53 ECD_01835 UPF0082 family protein 0.34 ECD_01257 LPS regulatory protein; putative modulator of LpxC proteolysis — —
Escherichia coli ECRC101 0.53 MCAODC_19150 putative transcriptional regulatory protein YebC 0.34 MCAODC_15710 lapB lipopolysaccharide assembly protein LapB — —
Escherichia coli ECOR27 0.53 NOLOHH_16700 putative transcriptional regulatory protein YebC 0.34 NOLOHH_20220 lapB lipopolysaccharide assembly protein LapB — —
Escherichia coli ECRC98 0.53 JDDGAC_00830 putative transcriptional regulatory protein YebC 0.34 JDDGAC_05100 lapB lipopolysaccharide assembly protein LapB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01864 putative transcriptional regulatory protein YebC 0.34 OHPLBJKB_02402 Lipopolysaccharide assembly protein B — —
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_04522 DNA-binding regulatory protein, YebC/PmpR family 0.33 H281DRAFT_03916 Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS15405 YebC/PmpR family DNA-binding transcriptional regulator 0.28 ABZR87_RS09490 lipopolysaccharide assembly protein LapB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF1645 FIG000859: hypothetical protein YebC 0.31 GFF2705 Heat shock (predicted periplasmic) protein YciM, precursor — —
Escherichia coli BW25113 0.53 b1864 yebC hypothetical protein (NCBI) 0.34 b1280 yciM hypothetical protein (NCBI) — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0693 DNA-binding regulatory protein, YebC/PmpR family 0.32 EX28DRAFT_0953 Predicted N-acetylglucosaminyl transferase — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS04920 YebC/PmpR family DNA-binding transcriptional regulator 0.47 LRK54_RS18050 lipopolysaccharide assembly protein LapB low > 59
Ralstonia solanacearum UW163 0.53 UW163_RS10130 YebC/PmpR family DNA-binding transcriptional regulator 0.28 UW163_RS16010 lipopolysaccharide assembly protein LapB — —
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS03540 YebC/PmpR family DNA-binding transcriptional regulator 0.28 RALBFv3_RS13800 lipopolysaccharide assembly protein LapB — —
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_01830 tACO1 YebC/PmpR family DNA-binding transcriptional regulator 0.47 OKGIIK_07250 lapB lipopolysaccharide assembly protein LapB low > 52
Rhodanobacter denitrificans MT42 0.53 LRK55_RS04700 YebC/PmpR family DNA-binding transcriptional regulator 0.47 LRK55_RS17905 lipopolysaccharide assembly protein LapB low > 63
Pantoea sp. MT58 0.53 IAI47_08435 YebC/PmpR family DNA-binding transcriptional regulator 0.32 IAI47_09270 lipopolysaccharide assembly protein LapB — —
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS06410 transcriptional regulator 0.33 BPHYT_RS14870 hypothetical protein — —
Ralstonia solanacearum PSI07 0.52 RPSI07_RS13685 YebC/PmpR family DNA-binding transcriptional regulator 0.28 RPSI07_RS19670 lipopolysaccharide assembly protein LapB — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4523 FIG000859: hypothetical protein YebC 0.22 GFF5349 Heat shock (predicted periplasmic) protein YciM, precursor — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18160 YebC/PmpR family DNA-binding transcriptional regulator 0.33 BWI76_RS11960 lipopolysaccharide assembly protein LapB — —
Variovorax sp. SCN45 0.52 GFF303 Probable transcriptional regulatory protein YebC 0.18 GFF6176 Lipopolysaccharide assembly protein LapB — —
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS24395 YebC/PmpR family DNA-binding transcriptional regulator 0.32 QEN71_RS04110 lipopolysaccharide assembly protein LapB — —
Variovorax sp. OAS795 0.51 ABID97_RS16740 YebC/PmpR family DNA-binding transcriptional regulator 0.16 ABID97_RS09485 lipopolysaccharide assembly protein LapB — —
Acidovorax sp. GW101-3H11 0.51 Ac3H11_2422 FIG000859: hypothetical protein 0.18 Ac3H11_2580 Heat shock (predicted periplasmic) protein YciM, precursor — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS02555 YebC/PmpR family DNA-binding transcriptional regulator 0.25 ABCV34_RS07075 lipopolysaccharide assembly protein LapB — —
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS10850 YebC/PmpR family DNA-binding transcriptional regulator 0.48 ABZR86_RS05550 lipopolysaccharide assembly protein LapB — —
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_14085 transcriptional regulator 0.34 CSW01_09565 lipopolysaccharide assembly protein LapB — —
Alteromonas macleodii MIT1002 0.32 MIT1002_00845 putative transcriptional regulatory protein YeeN 0.29 MIT1002_02185 tetratricopeptide repeat protein — —

Not shown: 46 genomes with orthologs for Xcc-8004.1434.1 only; 0 genomes with orthologs for Xcc-8004.2384.1 only