Conservation of cofitness between SMc00770 and SMc03153 in Sinorhizobium meliloti 1021

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc00770 putrescine-binding periplasmic protein 1.0 SMc03153 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 0.40 14
Rhizobium sp. OAE497 0.77 ABIE40_RS03265 polyamine ABC transporter substrate-binding protein 0.74 ABIE40_RS16720 2-dehydro-3-deoxy-phosphogluconate aldolase — —
Agrobacterium fabrum C58 0.61 Atu0609 ABC transporter, substrate binding protein (putrescine) 0.78 Atu4494 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase — —
Phaeobacter inhibens DSM 17395 0.55 PGA1_c34420 putrescine-binding periplasmic protein PotF 0.52 PGA1_c28010 KHG/KDPG aldolase — —
Shewanella amazonensis SB2B 0.54 Sama_2642 polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) 0.50 Sama_1809 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq) — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_929 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) 0.40 PfGW456L13_1903 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4514 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) 0.41 Pf6N2E2_2883 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) — —
Rahnella sp. WP5 0.54 EX31_RS09630 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.50 EX31_RS10625 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 89
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2260 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) 0.41 Pf1N1B4_587 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) — —
Pseudomonas sp. RS175 0.53 PFR28_04294 Spermidine-binding periplasmic protein SpuE 0.41 PFR28_00575 2-dehydro-3-deoxy-phosphogluconate aldolase — —
Bosea sp. OAE506 0.53 ABIE41_RS21650 polyamine ABC transporter substrate-binding protein 0.44 ABIE41_RS23505 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 77
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_13160 putrescine ABC transporter, substrate-binding component (from data) 0.41 AO356_05150 keto-deoxy-phosphogluconate aldolase — —
Pseudomonas sp. S08-1 0.53 OH686_11465 Putrescine ABC transporter putrescine-binding protein PotF 0.45 OH686_04520 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase 0.77 13
Dickeya dadantii 3937 0.53 DDA3937_RS09460 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.48 DDA3937_RS10140 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_4864 extracellular solute-binding protein, family 1 0.42 Psyr_1122 2-keto-3-deoxy-phosphogluconate aldolase — —
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_4864 extracellular solute-binding protein, family 1 0.42 Psyr_1122 2-keto-3-deoxy-phosphogluconate aldolase — —
Pseudomonas putida KT2440 0.53 PP_5180 spermidine/putrescine ABC transporter - periplasmic subunit 0.43 PP_1024 KHG/KDPG aldolase — —
Shewanella oneidensis MR-1 0.53 SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) 0.52 SO2486 eda 2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.53 Shewana3_3097 extracellular solute-binding protein (RefSeq) 0.52 Shewana3_2148 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq) — —
Pectobacterium carotovorum WPP14 0.52 HER17_RS12500 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.48 HER17_RS11775 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 75
Dickeya dianthicola ME23 0.52 DZA65_RS09790 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.48 DZA65_RS10585 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 75
Enterobacter sp. TBS_079 0.52 MPMX20_01495 Putrescine-binding periplasmic protein 0.49 MPMX20_02755 KHG/KDPG aldolase low > 85
Pseudomonas simiae WCS417 0.52 PS417_27120 ABC transporter substrate-binding protein 0.40 PS417_22100 keto-deoxy-phosphogluconate aldolase — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2099 Spermidine/putrescine-binding periplasmic protein 0.50 EX28DRAFT_0706 Entner-Doudoroff aldolase low > 76
Dickeya dianthicola 67-19 0.52 HGI48_RS09480 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.48 HGI48_RS10170 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 71
Pseudomonas fluorescens SBW25 0.52 PFLU_RS28770 polyamine ABC transporter substrate-binding protein 0.40 PFLU_RS23715 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS28770 polyamine ABC transporter substrate-binding protein 0.40 PFLU_RS23715 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2206.1 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) 0.41 Xcc-8004.2446.1 hypothetical protein — —
Klebsiella michiganensis M5al 0.52 BWI76_RS09460 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.44 BWI76_RS18095 ketohydroxyglutarate aldolase — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_08575 ABC transporter substrate-binding protein 0.40 AO353_03350 keto-deoxy-phosphogluconate aldolase — —
Pantoea sp. MT58 0.51 IAI47_13045 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.50 IAI47_08500 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 76
Escherichia coli BW25113 0.51 b0854 potF putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) 0.45 b1850 eda keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) low > 76
Escherichia fergusonii Becca 0.50 EFB2_03207 Putrescine-binding periplasmic protein 0.45 EFB2_02093 KHG/KDPG aldolase low > 86
Escherichia coli BL21 0.50 ECD_00859 putrescine ABC transporter periplasmic binding protein 0.45 ECD_01821 KHG/KDPG aldolase; 2-dehydro-3-deoxy-phosphogluconate/4-hydroxy-2- oxoglutarate aldolase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_02814 Putrescine-binding periplasmic protein 0.45 OHPLBJKB_01879 KHG/KDPG aldolase low > 73
Escherichia coli ECRC102 0.50 NIAGMN_04005 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 NIAGMN_01715 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Escherichia coli ECRC62 0.50 BNILDI_20585 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 BNILDI_15650 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Escherichia coli ECRC101 0.50 OKFHMN_05960 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 OKFHMN_26345 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Escherichia coli ECRC99 0.50 KEDOAH_21950 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 KEDOAH_01760 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Escherichia coli ECRC101 0.50 MCAODC_25175 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 MCAODC_19060 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Escherichia coli ECOR27 0.50 NOLOHH_22330 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 NOLOHH_16855 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Escherichia coli ECOR38 0.50 HEPCGN_02070 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 HEPCGN_04750 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 85
Escherichia coli Nissle 1917 0.50 ECOLIN_RS04550 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 ECOLIN_RS10305 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Escherichia coli ECRC98 0.50 JDDGAC_09595 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.45 JDDGAC_00920 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF758 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) 0.48 GFF1629 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) low > 78
Shewanella loihica PV-4 0.50 Shew_0973 extracellular solute-binding protein (RefSeq) 0.52 Shew_2045 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq) — —
Serratia liquefaciens MT49 0.50 IAI46_08370 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.47 IAI46_14570 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 86
Marinobacter adhaerens HP15 0.49 HP15_940 putrescine ABC transporter, periplasmic putrescine-binding protein 0.44 HP15_2177 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase low > 73
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS26645 ABC transporter substrate-binding protein 0.43 BPHYT_RS16730 2-dehydro-3-deoxyphosphogluconate aldolase — —
Castellaniella sp019104865 MT123 0.46 ABCV34_RS02360 polyamine ABC transporter substrate-binding protein 0.44 ABCV34_RS08610 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 48
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS07120 polyamine ABC transporter substrate-binding protein 0.45 QEN71_RS26915 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase — —
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_05180 putrescine transport system substrate-binding protein 0.44 H281DRAFT_04277 2-keto-3-deoxy-phosphogluconate aldolase — —
Azospirillum brasilense Sp245 0.39 AZOBR_RS08845 ABC transporter substrate-binding protein 0.36 AZOBR_RS29850 ketohydroxyglutarate aldolase — —
Azospirillum sp. SherDot2 0.37 MPMX19_04883 Spermidine-binding periplasmic protein SpuE 0.22 MPMX19_06076 KHG/KDPG aldolase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2035 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) 0.47 GFF5496 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) — —
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_07140 spermidine/putrescine ABC transporter substrate-binding protein 0.37 CSW01_01465 ketohydroxyglutarate aldolase low > 62
Bacteroides thetaiotaomicron VPI-5482 0.18 BT1288 spermidine/putrescine ABC transporter (NCBI ptt file) 0.20 BT0489 putative gluconate aldolase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS12435 ABC transporter substrate-binding protein 0.19 HMPREF1181_RS15440 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 56
Bacteroides ovatus ATCC 8483 0.17 BACOVA_00085 ABC transporter, solute-binding protein 0.20 BACOVA_03829 KDPG and KHG aldolase low > 94
Acidovorax sp. GW101-3H11 0.12 Ac3H11_189 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) 0.43 Ac3H11_2083 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) — —
Dinoroseobacter shibae DFL-12 0.08 Dshi_2123 extracellular solute-binding protein family 1 (RefSeq) 0.49 Dshi_1768 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq) — —

Not shown: 9 genomes with orthologs for SMc00770 only; 23 genomes with orthologs for SMc03153 only